Rmu_co8428107.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8428107.1
OG0000418
Physical Location & Seq
Forward (+)
89 .. 922
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8428107.1_g000001.1.cds

Sequence Viewer

Length: 834 bp
atgtatgggggttctacatatgaggaaggagaacccctctacttctacaccaagcgcatcaaacagaatagtaatggcaaacgctttgctcggaaggtaggctccggtacatggagtggagagtactcgaaagaggttcttgctgccgatgacggtaaaaccaaaattgggacaatgaggaactttcgctacgagaagggatgtgattctggtcaaaacggtgcatggctcatgcacgagtacgagagtgagttcgataagaacggggaagatgattatgtaatttgcgttttgagaaaaaatccaagaaaagctccagcactactacaacctgatcagagagatattgaaagtacaaagaagagtagtgtcaatgacaaaaagagaaagaggatgaagtcggacgacgttgttgatcatcaagatcatcaacagagaaagctggaaaagcaacaaaaggatgatcgtgaactgataaagatcgaagaggaagaaagaaaggaagagagttacgacgaacaaggccgtagcagttgtacgcagctgccctatcatcatgatcaagataataatattgattatcctgataatcataatttttatttggattattattttccagagctccttggcaataattacgatgatggtgtcactatagacgaactcattggaccaatttcagatgattctgtatactacaagtccatcccatttcaggatcagttatatcacggcgacgatgacagcttcaacttcgtagattactcggatggaggggtgtcacagctgcctaacgatcaacacactgttgattacctggggaatatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

277

Amino Acids

32.28

Weight (kDa)

4.82

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 696
AclWI GGATC 1 cut(s) 729
AfaI GTAC 5 cut(s) 109, 125, 242, 355, 538
AfiI CCNNNNNNNGG 3 cut(s) 111, 168, 718
AgsI TTSAA 2 cut(s) 350, 754
AjnI CCWGG 1 cut(s) 819
AluBI AGCT 6 cut(s) 314, 442, 544, 625, 750, 790
AluI AGCT 6 cut(s) 314, 442, 544, 625, 750, 790
Alw21I GWGCWC 1 cut(s) 627
AlwI GGATC 1 cut(s) 729
AoxI GGCC 1 cut(s) 523
ApeKI GCWGC 4 cut(s) 143, 541, 544, 790
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 674
AvaII GGWCC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 627
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 4 cut(s) 130, 531, 553, 777
BccI CCATC 3 cut(s) 641, 716, 767
BceAI ACGGC 2 cut(s) 510, 751
BciT130I CCWGG 1 cut(s) 821
BclI TGATCA 3 cut(s) 334, 415, 559
BfmI CTRYAG 1 cut(s) 657
BisI GCNGC 4 cut(s) 144, 542, 545, 791
BlsI GCNGC 4 cut(s) 145, 543, 546, 792
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 821
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 821
BmsI GCATC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 628, 820
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 168, 718
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 2 cut(s) 628, 820
BseGI GGATG 5 cut(s) 206, 399, 466, 708, 778
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 3 cut(s) 111, 168, 718
BseXI GCAGC 4 cut(s) 130, 531, 553, 777
BshFI GGCC 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 111, 168, 718
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
BspANI GGCC 1 cut(s) 525
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 729
BssECI CCNNGG 2 cut(s) 628, 820
BssMI GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
BssNAI GTATAC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 628
Bst1107I GTATAC 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 3 cut(s) 155, 221, 811
Bst6I CTCTTC 3 cut(s) 356, 480, 498
BstF5I GGATG 5 cut(s) 206, 399, 466, 708, 778
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 8 cut(s) 337, 418, 427, 466, 483, 562, 724, 802
BstMBI GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 819
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 4 cut(s) 130, 531, 553, 777
BstZ17I GTATAC 1 cut(s) 697
BsuRI GGCC 1 cut(s) 525
BtsCI GGATG 5 cut(s) 206, 399, 466, 708, 778
BtsIMutI CAGTG 1 cut(s) 807
CciI TCATGA 1 cut(s) 556
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 674
Csp6I GTAC 5 cut(s) 108, 124, 241, 354, 537
CviAII CATG 4 cut(s) 111, 225, 232, 557
CviJI RGCY 9 cut(s) 102, 229, 314, 442, 525, 544, 625, 750, 790
CviKI_1 RGCY 9 cut(s) 102, 229, 314, 442, 525, 544, 625, 750, 790
CviQI GTAC 5 cut(s) 108, 124, 241, 354, 537
DpnI GATC 8 cut(s) 336, 417, 426, 465, 482, 561, 723, 801
DpnII GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
Eam1104I CTCTTC 3 cut(s) 356, 480, 498
EarI CTCTTC 3 cut(s) 356, 480, 498
Ecl136II GAGCTC 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 627
Eco47I GGWCC 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 625
EcoICRI GAGCTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 4 cut(s) 114, 228, 235, 560
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 184
FatI CATG 4 cut(s) 110, 224, 231, 556
FauNDI CATATG 1 cut(s) 19
FbaI TGATCA 3 cut(s) 334, 415, 559
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 4 cut(s) 144, 542, 545, 791
FokI GGATG 5 cut(s) 213, 406, 473, 695, 785
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 4 cut(s) 144, 542, 545, 791
GlaI GCGC 1 cut(s) 56
GluI GCNGC 4 cut(s) 144, 542, 545, 791
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 525
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 114, 228, 235, 560
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 2 cut(s) 206, 689
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 470, 697
Hpy188I TCNGA 5 cut(s) 93, 339, 403, 685, 772
Hpy188III TCNNGA 7 cut(s) 422, 467, 557, 563, 584, 620, 719
Hpy8I GTNNAC 2 cut(s) 470, 697
Hpy99I CGWCG 3 cut(s) 410, 518, 743
HpyAV CCTTC 3 cut(s) 20, 88, 190
HpyCH4III ACNGT 3 cut(s) 155, 221, 811
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 224, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 114, 228, 235, 560
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 3 cut(s) 334, 415, 559
Kzo9I GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
LmnI GCTCC 3 cut(s) 107, 319, 630
LpnPI CCDG 9 cut(s) 118, 195, 330, 345, 428, 597, 633, 704, 806
Lsp1109I GCAGC 4 cut(s) 130, 531, 553, 777
LweI GCATC 1 cut(s) 66
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 509, 652, 783
MalI GATC 8 cut(s) 336, 417, 426, 465, 482, 561, 723, 801
MboI GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
MboII GAAGA 5 cut(s) 281, 373, 497, 503, 515
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 5 cut(s) 165, 282, 595, 637, 678
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 7 cut(s) 16, 47, 127, 171, 384, 481, 770
MspA1I CMGCKG 2 cut(s) 544, 790
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 821
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 1 cut(s) 448
NdeI CATATG 1 cut(s) 19
NdeII GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
NlaIII CATG 4 cut(s) 114, 228, 235, 560
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 652, 783
PagI TCATGA 1 cut(s) 556
PfeI GAWTC 2 cut(s) 206, 689
PkrI GCNGC 4 cut(s) 145, 543, 546, 792
Psp124BI GAGCTC 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 819
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 674
PsrI GAACNNNNNNTAC 2 cut(s) 173, 205
PvuII CAGCTG 2 cut(s) 544, 790
RsaI GTAC 5 cut(s) 109, 125, 242, 355, 538
RsaNI GTAC 5 cut(s) 108, 124, 241, 354, 537
SacI GAGCTC 1 cut(s) 627
SatI GCNGC 4 cut(s) 144, 542, 545, 791
Sau3AI GATC 8 cut(s) 334, 415, 424, 463, 480, 559, 721, 799
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 1 cut(s) 674
Sse9I AATT 5 cut(s) 165, 282, 595, 637, 678
SspI AATATT 1 cut(s) 574
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 3 cut(s) 155, 221, 811
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 128, 255, 483
TasI AATT 5 cut(s) 165, 282, 595, 637, 678
TatI WGTACW 2 cut(s) 123, 353
TfiI GAWTC 2 cut(s) 206, 689
TscAI CASTG 1 cut(s) 814
TseFI GTSAC 2 cut(s) 652, 783
TseI GCWGC 4 cut(s) 143, 541, 544, 790
Tsp45I GTSAC 2 cut(s) 652, 783
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 696
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.