RLG00000013962
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000418
Physical Location & Seq
Forward (+)
44774015 .. 44774869
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013962

Sequence Viewer

Length: 855 bp
ATGGGTTATCCGATGATTCCGATCGGGTACAGGTTTCATCCCACTGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATCCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGCACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAAGTAGGCTCGGGAACGTGGAGCGGGCAGTTTTCCAGAGAGGTTGTGGCCGCCGATAGAGAGACCGGATGCCGTATCAATGGGATTAGGAGGGAGTTTAGGTACGAGGGCGGATGTGTTCCTCACCAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCACTGATGCCTTGGTGCTGTGCACCTTGAAGAAGAACCCAAGAAAAGCTGCTCAGACCAATGGCAAGAAGAGGAAGATGATCAATTCCGAGAGTCGAGATCCTCAGTTGTTGCAAGTTGTTAATGAAGAGCTCTATCCTGAGTTATATGTTGATAATGGGCCTCTGTTTTCTATAGAGGAACTTTTTCCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATACCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCAAAGACAACAACTTCAGCTTTGTATCCAGTGATCATGATCAATTCTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

285

Amino Acids

32.89

Weight (kDa)

4.91

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 141 3.9e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AccIII TCCGGA 2 cut(s) 127, 637
AciI CCGC 5 cut(s) 250, 285, 312, 372, 759
AclWI GGATC 5 cut(s) 521, 635, 648, 690, 726
AcoI YGGCCR 2 cut(s) 139, 309
AcsI RAATTY 1 cut(s) 764
AcuI CTGAAG 1 cut(s) 781
AfaI GTAC 2 cut(s) 29, 365
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 235, 457, 770
AjnI CCWGG 2 cut(s) 83, 152
AluBI AGCT 3 cut(s) 476, 559, 801
AluI AGCT 3 cut(s) 476, 559, 801
Alw21I GWGCWC 2 cut(s) 452, 561
Alw26I GTCTC 3 cut(s) 317, 675, 681
Alw44I GTGCAC 1 cut(s) 448
AlwI GGATC 5 cut(s) 521, 635, 648, 690, 726
Ama87I CYCGRG 1 cut(s) 271
Aor13HI TCCGGA 2 cut(s) 127, 637
AoxI GGCC 4 cut(s) 81, 139, 309, 587
ApaLI GTGCAC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 612
AspS9I GGNCC 2 cut(s) 81, 587
AsuHPI GGTGA 2 cut(s) 208, 377
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 452
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 2 cut(s) 452, 561
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 82, 188
BceAI ACGGC 2 cut(s) 154, 318
BciT130I CCWGG 2 cut(s) 85, 154
BciVI GTATCC 2 cut(s) 135, 817
BclI TGATCA 4 cut(s) 507, 706, 814, 820
BcoDI GTCTC 3 cut(s) 317, 675, 681
BfmI CTRYAG 1 cut(s) 600
BfuI GTATCC 2 cut(s) 135, 817
BglII AGATCT 1 cut(s) 114
BisI GCNGC 2 cut(s) 312, 477
BlsI GCNGC 2 cut(s) 313, 478
Bme1390I CCNGG 2 cut(s) 85, 154
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 81, 587
BmiI GGNNCC 2 cut(s) 181, 642
BmrFI CCNGG 2 cut(s) 85, 154
BmsI GCATC 3 cut(s) 320, 396, 424
BpiI GAAGAC 1 cut(s) 738
BplI GAGNNNNNCTC 2 cut(s) 189, 221
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 417
BsaBI GATNNNNATC 2 cut(s) 20, 819
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 152, 153, 438
BsaWI WCCGGW 3 cut(s) 127, 326, 637
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 810
Bse8I GATNNNNATC 2 cut(s) 20, 819
BseAI TCCGGA 2 cut(s) 127, 637
BseBI CCWGG 2 cut(s) 85, 154
BseDI CCNNGG 3 cut(s) 152, 153, 438
BseGI GGATG 5 cut(s) 37, 93, 196, 335, 380
BseJI GATNNNNATC 2 cut(s) 20, 819
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 5 cut(s) 494, 545, 558, 686, 692
BseNI ACTGG 1 cut(s) 810
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 83, 141, 311, 589
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 452, 561
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 3 cut(s) 128, 327, 638
BslFI GGGAC 2 cut(s) 179, 411
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 3 cut(s) 317, 675, 681
BsmFI GGGAC 2 cut(s) 179, 411
BsnI GGCC 4 cut(s) 83, 141, 311, 589
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 452, 561
Bsp13I TCCGGA 2 cut(s) 127, 637
BspACI CCGC 5 cut(s) 250, 285, 312, 372, 759
BspANI GGCC 4 cut(s) 83, 141, 311, 589
BspCNI CTCAG 5 cut(s) 493, 544, 559, 685, 691
BspEI TCCGGA 2 cut(s) 127, 637
BspHI TCATGA 2 cut(s) 744, 817
BspLI GGNNCC 2 cut(s) 181, 642
BspPI GGATC 5 cut(s) 521, 635, 648, 690, 726
BspQI GCTCTTC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 810
BssECI CCNNGG 3 cut(s) 152, 153, 438
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 85, 154
Bst4CI ACNGT 2 cut(s) 176, 777
Bst6I CTCTTC 3 cut(s) 491, 549, 651
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 248, 287
BstDEI CTNAG 5 cut(s) 480, 531, 567, 672, 678
BstF5I GGATG 5 cut(s) 37, 93, 196, 335, 380
BstMAI GTCTC 3 cut(s) 317, 675, 681
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 2 cut(s) 85, 154
BstSCI CCNGG 2 cut(s) 83, 152
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 3 cut(s) 114, 526, 640
BstYI RGATCY 3 cut(s) 114, 526, 640
BsuI GTATCC 2 cut(s) 135, 817
BsuRI GGCC 4 cut(s) 83, 141, 311, 589
BtsCI GGATG 5 cut(s) 37, 93, 196, 335, 380
BtsIMutI CAGTG 3 cut(s) 42, 429, 817
Cac8I GCNNGC 2 cut(s) 248, 287
CciI TCATGA 2 cut(s) 744, 817
Cfr13I GGNCC 2 cut(s) 81, 587
Csp6I GTAC 2 cut(s) 28, 364
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 3 cut(s) 745, 818, 849
CviJI RGCY 9 cut(s) 83, 141, 202, 270, 311, 476, 559, 589, 801
CviKI_1 RGCY 9 cut(s) 83, 141, 202, 270, 311, 476, 559, 589, 801
CviQI GTAC 2 cut(s) 28, 364
DdeI CTNAG 5 cut(s) 480, 531, 567, 672, 678
EaeI YGGCCR 2 cut(s) 139, 309
Eam1104I CTCTTC 3 cut(s) 491, 549, 651
EarI CTCTTC 3 cut(s) 491, 549, 651
EciI GGCGGA 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 781
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 83, 152
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 3 cut(s) 748, 821, 852
FaqI GGGAC 2 cut(s) 179, 411
FatI CATG 3 cut(s) 744, 817, 848
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 2 cut(s) 691, 727
FbaI TGATCA 4 cut(s) 507, 706, 814, 820
Fnu4HI GCNGC 2 cut(s) 312, 477
FokI GGATG 5 cut(s) 24, 100, 203, 342, 387
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 2 cut(s) 312, 477
GluI GCNGC 2 cut(s) 312, 477
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 4 cut(s) 83, 141, 311, 589
HapII CCGG 3 cut(s) 128, 327, 638
Hin1II CATG 3 cut(s) 748, 821, 852
HinfI GANTC 4 cut(s) 16, 520, 659, 668
HpaII CCGG 3 cut(s) 128, 327, 638
HphI GGTGA 2 cut(s) 208, 377
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 5 cut(s) 12, 21, 121, 483, 517
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 751
HpyCH4III ACNGT 2 cut(s) 176, 777
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 409, 450, 541, 837
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 5 cut(s) 480, 531, 567, 672, 678
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 3 cut(s) 748, 821, 852
Kpn2I TCCGGA 2 cut(s) 127, 637
Ksp22I TGATCA 4 cut(s) 507, 706, 814, 820
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 3 cut(s) 320, 396, 424
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 285
MflI RGATCY 3 cut(s) 114, 526, 640
MhlI GDGCHC 2 cut(s) 452, 561
MluCI AATT 5 cut(s) 419, 511, 710, 764, 824
MlyI GAGTC 3 cut(s) 529, 668, 677
MroI TCCGGA 2 cut(s) 127, 637
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 2 cut(s) 549, 845
MslI CAYNNNNRTG 2 cut(s) 108, 726
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 3 cut(s) 128, 327, 638
MspR9I CCNGG 2 cut(s) 85, 154
MvaI CCWGG 2 cut(s) 85, 154
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeI CATATG 2 cut(s) 691, 727
NlaIII CATG 3 cut(s) 748, 821, 852
NlaIV GGNNCC 2 cut(s) 181, 642
NspV TTCGAA 1 cut(s) 417
PagI TCATGA 2 cut(s) 744, 817
PasI CCCWGGG 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 313, 478
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 3 cut(s) 528, 667, 676
PpsI GAGTC 3 cut(s) 528, 667, 676
Psp124BI GAGCTC 1 cut(s) 561
Psp6I CCWGG 2 cut(s) 83, 152
PspGI CCWGG 2 cut(s) 83, 152
PspN4I GGNNCC 2 cut(s) 181, 642
PspPI GGNCC 2 cut(s) 81, 587
PsuI RGATCY 3 cut(s) 114, 526, 640
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 2 cut(s) 29, 365
RsaNI GTAC 2 cut(s) 28, 364
RseI CAYNNNNRTG 2 cut(s) 108, 726
SacI GAGCTC 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 549, 845
SatI GCNGC 2 cut(s) 312, 477
Sau96I GGNCC 2 cut(s) 81, 587
SchI GAGTC 3 cut(s) 529, 668, 677
ScrFI CCNGG 2 cut(s) 85, 154
SduI GDGCHC 2 cut(s) 452, 561
SetI ASST 9 cut(s) 35, 281, 306, 365, 455, 478, 561, 743, 803
SfaNI GCATC 3 cut(s) 320, 396, 424
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 1 cut(s) 417
SmiMI CAYNNNNRTG 2 cut(s) 108, 726
Sse9I AATT 5 cut(s) 419, 511, 710, 764, 824
SsiI CCGC 5 cut(s) 250, 285, 312, 372, 759
SstI GAGCTC 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 83, 152
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 176, 777
TaiI ACGT 1 cut(s) 281
TaqI TCGA 4 cut(s) 107, 417, 523, 662
TasI AATT 5 cut(s) 419, 511, 710, 764, 824
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 549, 845
Tru9I TTAA 2 cut(s) 549, 845
TscAI CASTG 3 cut(s) 49, 436, 817
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 6 cut(s) 26, 63, 567, 714, 733, 744
TspRI CASTG 3 cut(s) 49, 436, 817
VneI GTGCAC 1 cut(s) 448
XapI RAATTY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 2 cut(s) 304, 436
XmnI GAANNNNTTC 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.