Rroxscaffold_7G00195150
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000418
Physical Location & Seq
Forward (+)
37383369 .. 37384334
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195150.1

Sequence Viewer

Length: 966 bp
ATGGGTTATCCGATGATTCCGATCGGGTACAGGTTTCATCCCACAGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAAGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATCCGGAGTTTTATGGCCAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGGGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGTAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAAGTAGGCTCGGGAACGTGGAGCGGGCAGTTTTCCAGAGAGGTTGTGGCCACGGATAGAGACACCGGATGTCGTATCACTGGGATTAGAAGAGAATTTAGGTACGAGGGTGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCATTGATGCCTTGGTGTTGTGCACCTTGAAGAAGAACCCAAGAAAAGCTGCTCAGACCAATGGTAAGAAGAGGAAGATGATTGTTGATGATAATCAACCGAGAAAAACCAAGGCAGTGAGATCGGAAAAGGCTGAGACTTGTGAGGAACAACAATCCACCATCTGTGTCGATTTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGTTGTTGCAAGTTGTTGATGAAGAGCTCTATCCTGAGTTATATCTTGATCCTGAGTTATATCTTGATAATGGGCCTCTGTTTTCTATGGATGAACTTGTTGCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAATACTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

321

Amino Acids

37.13

Weight (kDa)

4.6

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 140 2.4e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccIII TCCGGA 2 cut(s) 127, 754
AciI CCGC 3 cut(s) 247, 282, 876
AclWI GGATC 6 cut(s) 371, 674, 752, 765, 807, 843
AcoI YGGCCR 2 cut(s) 139, 306
AcsI RAATTY 2 cut(s) 353, 881
AcuI CTGAAG 1 cut(s) 898
AfaI GTAC 2 cut(s) 29, 362
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 232, 454, 887
AjnI CCWGG 2 cut(s) 149, 179
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 473, 658, 858, 918
AluI AGCT 4 cut(s) 473, 658, 858, 918
Alw21I GWGCWC 2 cut(s) 449, 660
Alw26I GTCTC 5 cut(s) 312, 554, 599, 792, 798
Alw44I GTGCAC 1 cut(s) 445
AlwI GGATC 6 cut(s) 371, 674, 752, 765, 807, 843
Ama87I CYCGRG 1 cut(s) 268
Aor13HI TCCGGA 2 cut(s) 127, 754
AoxI GGCC 4 cut(s) 81, 139, 306, 704
ApaLI GTGCAC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 2 cut(s) 353, 881
AspS9I GGNCC 2 cut(s) 81, 704
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 449
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BalI TGGCCA 2 cut(s) 141, 308
BamHI GGATCC 1 cut(s) 757
BanII GRGCYC 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 855, 909
Bbv12I GWGCWC 2 cut(s) 449, 660
BbvI GCAGC 1 cut(s) 460
BccI CCATC 3 cut(s) 82, 185, 593
BcgI CGANNNNNNTGC 2 cut(s) 528, 562
BciT130I CCWGG 2 cut(s) 151, 181
BciVI GTATCC 2 cut(s) 135, 934
BclI TGATCA 2 cut(s) 823, 931
BcoDI GTCTC 5 cut(s) 312, 554, 599, 792, 798
BfuI GTATCC 2 cut(s) 135, 934
BglII AGATCT 1 cut(s) 114
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
Bme1390I CCNGG 2 cut(s) 151, 181
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 81, 704
BmiI GGNNCC 2 cut(s) 178, 759
BmrFI CCNGG 2 cut(s) 151, 181
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 393, 421
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 855, 909
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 414
BsaBI GATNNNNATC 2 cut(s) 20, 516
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 6 cut(s) 149, 150, 180, 309, 435, 534
BsaWI WCCGGW 3 cut(s) 127, 323, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 343, 927
Bse8I GATNNNNATC 2 cut(s) 20, 516
BseAI TCCGGA 2 cut(s) 127, 754
BseBI CCWGG 2 cut(s) 151, 181
BseDI CCNNGG 6 cut(s) 149, 150, 180, 309, 435, 534
BseGI GGATG 4 cut(s) 37, 193, 332, 727
BseJI GATNNNNATC 2 cut(s) 20, 516
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 6 cut(s) 491, 549, 657, 675, 803, 809
BseNI ACTGG 2 cut(s) 343, 927
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 1 cut(s) 460
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 83, 141, 308, 706
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 449, 660
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 3 cut(s) 128, 324, 755
BslFI GGGAC 2 cut(s) 176, 408
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 5 cut(s) 312, 554, 599, 792, 798
BsmFI GGGAC 2 cut(s) 176, 408
BsnI GGCC 4 cut(s) 83, 141, 308, 706
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 449, 660
Bsp13I TCCGGA 2 cut(s) 127, 754
BspACI CCGC 3 cut(s) 247, 282, 876
BspANI GGCC 4 cut(s) 83, 141, 308, 706
BspCNI CTCAG 6 cut(s) 490, 550, 658, 676, 802, 808
BspEI TCCGGA 2 cut(s) 127, 754
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 178, 759
BspPI GGATC 6 cut(s) 371, 674, 752, 765, 807, 843
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 282
BsrI ACTGG 2 cut(s) 343, 927
BssECI CCNNGG 6 cut(s) 149, 150, 180, 309, 435, 534
BssT1I CCWWGG 2 cut(s) 435, 534
Bst2UI CCWGG 2 cut(s) 151, 181
Bst4CI ACNGT 2 cut(s) 173, 894
Bst6I CTCTTC 5 cut(s) 343, 488, 597, 648, 768
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 245, 284
BstDEI CTNAG 6 cut(s) 477, 558, 666, 684, 789, 795
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 37, 193, 332, 727
BstMAI GTCTC 5 cut(s) 312, 554, 599, 792, 798
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 2 cut(s) 151, 181
BstSCI CCNGG 2 cut(s) 149, 179
BstSLI GKGCMC 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 460
BstV2I GAAGAC 2 cut(s) 855, 909
BstX2I RGATCY 2 cut(s) 114, 757
BstYI RGATCY 2 cut(s) 114, 757
BsuI GTATCC 2 cut(s) 135, 934
BsuRI GGCC 4 cut(s) 83, 141, 308, 706
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 37, 193, 332, 727
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 336, 546, 934
Cac8I GCNNGC 2 cut(s) 245, 284
CciI TCATGA 1 cut(s) 861
Cfr13I GGNCC 2 cut(s) 81, 704
Csp6I GTAC 2 cut(s) 28, 361
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 2 cut(s) 862, 960
CviQI GTAC 2 cut(s) 28, 361
DdeI CTNAG 6 cut(s) 477, 558, 666, 684, 789, 795
EaeI YGGCCR 2 cut(s) 139, 306
Eam1104I CTCTTC 5 cut(s) 343, 488, 597, 648, 768
EarI CTCTTC 5 cut(s) 343, 488, 597, 648, 768
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 435, 534
Eco24I GRGCYC 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 898
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 658
EcoRII CCWGG 2 cut(s) 149, 179
EcoT14I CCWWGG 2 cut(s) 435, 534
EcoT38I GRGCYC 1 cut(s) 660
ErhI CCWWGG 2 cut(s) 435, 534
FaeI CATG 2 cut(s) 865, 963
FaqI GGGAC 2 cut(s) 176, 408
FatI CATG 2 cut(s) 861, 959
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 2 cut(s) 808, 844
FbaI TGATCA 2 cut(s) 823, 931
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 4 cut(s) 24, 200, 339, 734
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 4 cut(s) 83, 141, 308, 706
HapII CCGG 3 cut(s) 128, 324, 755
Hin1II CATG 2 cut(s) 865, 963
HinfI GANTC 4 cut(s) 16, 619, 776, 785
HpaII CCGG 3 cut(s) 128, 324, 755
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 6 cut(s) 12, 21, 121, 480, 550, 616
Hpy8I GTNNAC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 173, 894
HpyCH4IV ACGT 2 cut(s) 220, 275
HpyCH4V TGCA 5 cut(s) 406, 447, 640, 734, 948
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 6 cut(s) 477, 558, 666, 684, 789, 795
HpySE526I ACGT 2 cut(s) 220, 275
Hsp92II CATG 2 cut(s) 865, 963
Kpn2I TCCGGA 2 cut(s) 127, 754
Ksp22I TGATCA 2 cut(s) 823, 931
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 2 cut(s) 393, 421
MaeII ACGT 2 cut(s) 220, 275
MaeIII GTNAC 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 282
MflI RGATCY 2 cut(s) 114, 757
MhlI GDGCHC 2 cut(s) 449, 660
MlsI TGGCCA 2 cut(s) 141, 308
MluCI AATT 5 cut(s) 353, 416, 610, 827, 881
MluNI TGGCCA 2 cut(s) 141, 308
MlyI GAGTC 3 cut(s) 628, 785, 794
MnlI CCTC 8 cut(s) 210, 292, 358, 489, 562, 717, 753, 771
Mox20I TGGCCA 2 cut(s) 141, 308
MroI TCCGGA 2 cut(s) 127, 754
MscI TGGCCA 2 cut(s) 141, 308
MseI TTAA 1 cut(s) 956
MslI CAYNNNNRTG 2 cut(s) 108, 843
Msp20I TGGCCA 2 cut(s) 141, 308
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 3 cut(s) 128, 324, 755
MspR9I CCNGG 2 cut(s) 151, 181
MvaI CCWGG 2 cut(s) 151, 181
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeI CATATG 2 cut(s) 808, 844
NlaIII CATG 2 cut(s) 865, 963
NlaIV GGNNCC 2 cut(s) 178, 759
NspV TTCGAA 1 cut(s) 414
PagI TCATGA 1 cut(s) 861
PasI CCCWGGG 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 475
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 3 cut(s) 627, 784, 793
PpsI GAGTC 3 cut(s) 627, 784, 793
Psp124BI GAGCTC 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 149, 179
PspGI CCWGG 2 cut(s) 149, 179
PspN4I GGNNCC 2 cut(s) 178, 759
PspPI GGNCC 2 cut(s) 81, 704
PsuI RGATCY 2 cut(s) 114, 757
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 2 cut(s) 29, 362
RsaNI GTAC 2 cut(s) 28, 361
RseI CAYNNNNRTG 2 cut(s) 108, 843
SacI GAGCTC 1 cut(s) 660
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 1 cut(s) 956
SatI GCNGC 1 cut(s) 474
Sau96I GGNCC 2 cut(s) 81, 704
SchI GAGTC 3 cut(s) 628, 785, 794
ScrFI CCNGG 2 cut(s) 151, 181
SduI GDGCHC 2 cut(s) 449, 660
SfaNI GCATC 2 cut(s) 393, 421
SfuI TTCGAA 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 108, 843
Sse9I AATT 5 cut(s) 353, 416, 610, 827, 881
SsiI CCGC 3 cut(s) 247, 282, 876
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 2 cut(s) 149, 179
StyI CCWWGG 2 cut(s) 435, 534
TaaI ACNGT 2 cut(s) 173, 894
TaiI ACGT 2 cut(s) 223, 278
TaqI TCGA 5 cut(s) 107, 414, 594, 622, 779
TasI AATT 5 cut(s) 353, 416, 610, 827, 881
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 956
Tru9I TTAA 1 cut(s) 956
TscAI CASTG 3 cut(s) 343, 546, 934
TseI GCWGC 1 cut(s) 473
TspDTI ATGAA 7 cut(s) 26, 63, 666, 738, 831, 850, 861
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 3 cut(s) 343, 546, 934
VneI GTGCAC 1 cut(s) 445
XapI RAATTY 2 cut(s) 353, 881
XcmI CCANNNNNNNNNTGG 2 cut(s) 301, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.