Rh6BG148700
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000418
Physical Location & Seq
Forward (+)
23859139 .. 23859987
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG148700.1

Sequence Viewer

Length: 849 bp
ATGGGCAATCAGTTCCACTCGAATGAGGTCTCCGAGTACTCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGTAAAGTAGGCTCGGGAACGTGGAGCGGGCAGTTTTCGAGAGAGATTGTGGCCGTGGATAGAGACACCGGATGTCGTATTACTGGGATGAGGAGGGAATTTAGGTACGAGGGTGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCATGAGTACGAGTTGTGTGCCAGTGATATCTTGGTGTTGTGCACCTTGAAGAAAAACCTAAGAAAAGCTAGTAGTGCTCAGAAGAGGAAGAGGATTGTTGATAATCAACCGAGAAAAACCAAGGCAGTGAGATCGGAAAAGGCTGAGACTTGTGAGGATGTCGATCTTACAGATCTGGAACAGACCAATTCCGAGAGTCGAGATCATCAGTTGTTGCAAGTTGTTGATGAAGATTATCTCTATCCTGAGTTATATCCTGATAATGGGCCTCTGTTTTCTATGGAGGAACTTCTTGCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTGAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTACAGCTTTGTATCCAGTGATCAATACTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

282

Amino Acids

32.58

Weight (kDa)

4.57

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 112 3.7e-13 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 3 cut(s) 163, 198, 759
AclWI GGATC 5 cut(s) 287, 635, 648, 690, 726
AcoI YGGCCR 2 cut(s) 52, 222
AcsI RAATTY 2 cut(s) 269, 764
AfaI GTAC 3 cut(s) 38, 278, 329
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 3 cut(s) 148, 370, 770
AjnI CCWGG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 3 cut(s) 389, 741, 801
AluI AGCT 3 cut(s) 389, 741, 801
Alw21I GWGCWC 3 cut(s) 365, 400, 701
Alw26I GTCTC 5 cut(s) 34, 228, 461, 675, 681
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 5 cut(s) 287, 635, 648, 690, 726
Ama87I CYCGRG 1 cut(s) 184
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 3 cut(s) 52, 222, 587
ApaLI GTGCAC 1 cut(s) 361
ApoI RAATTY 2 cut(s) 269, 764
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 365
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BamHI GGATCC 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 738, 792
Bbv12I GWGCWC 3 cut(s) 365, 400, 701
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 67, 209
BcgI CGANNNNNNTGC 4 cut(s) 320, 354, 435, 469
BciT130I CCWGG 1 cut(s) 67
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 2 cut(s) 706, 814
BcoDI GTCTC 5 cut(s) 34, 228, 461, 675, 681
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 796
BfuI GTATCC 1 cut(s) 817
BglII AGATCT 1 cut(s) 493
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 94, 642
BmrFI CCNGG 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 2 cut(s) 738, 792
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 65, 66, 225, 441
BsaWI WCCGGW 2 cut(s) 239, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 3 cut(s) 259, 342, 810
Bse8I GATNNNNATC 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 637
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 4 cut(s) 65, 66, 225, 441
BseGI GGATG 4 cut(s) 109, 248, 264, 484
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 5 cut(s) 413, 456, 558, 686, 692
BseNI ACTGG 3 cut(s) 259, 342, 810
BseRI GAGGAG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 365
BshFI GGCC 3 cut(s) 54, 224, 589
BsiHKAI GWGCWC 3 cut(s) 365, 400, 701
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 2 cut(s) 240, 638
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 5 cut(s) 34, 228, 461, 675, 681
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 3 cut(s) 54, 224, 589
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 3 cut(s) 365, 400, 701
Bsp13I TCCGGA 1 cut(s) 637
BspACI CCGC 3 cut(s) 163, 198, 759
BspANI GGCC 3 cut(s) 54, 224, 589
BspCNI CTCAG 5 cut(s) 412, 457, 559, 685, 691
BspEI TCCGGA 1 cut(s) 637
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 2 cut(s) 94, 642
BspPI GGATC 5 cut(s) 287, 635, 648, 690, 726
BspTNI GGTCTC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 198
BsrI ACTGG 3 cut(s) 259, 342, 810
BssECI CCNNGG 4 cut(s) 65, 66, 225, 441
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 89, 777
Bst6I CTCTTC 3 cut(s) 398, 404, 651
BstC8I GCNNGC 2 cut(s) 161, 200
BstDEI CTNAG 6 cut(s) 380, 399, 465, 567, 672, 678
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 4 cut(s) 109, 248, 264, 484
BstMAI GTCTC 5 cut(s) 34, 228, 461, 675, 681
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 796
BstSLI GKGCMC 1 cut(s) 365
BstV2I GAAGAC 2 cut(s) 738, 792
BstX2I RGATCY 2 cut(s) 493, 640
BstYI RGATCY 2 cut(s) 493, 640
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 3 cut(s) 54, 224, 589
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 4 cut(s) 109, 248, 264, 484
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 349, 453, 817
Cac8I GCNNGC 2 cut(s) 161, 200
CciI TCATGA 1 cut(s) 744
Cfr13I GGNCC 1 cut(s) 587
Csp6I GTAC 3 cut(s) 37, 277, 328
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 3 cut(s) 323, 745, 843
CviJI RGCY 9 cut(s) 54, 115, 183, 224, 389, 464, 589, 741, 801
CviKI_1 RGCY 9 cut(s) 54, 115, 183, 224, 389, 464, 589, 741, 801
CviQI GTAC 3 cut(s) 37, 277, 328
DdeI CTNAG 6 cut(s) 380, 399, 465, 567, 672, 678
EaeI YGGCCR 2 cut(s) 52, 222
Eam1104I CTCTTC 3 cut(s) 398, 404, 651
EarI CTCTTC 3 cut(s) 398, 404, 651
Eco130I CCWWGG 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 65
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 3 cut(s) 326, 748, 846
FaiI YATR 9 cut(s) 324, 574, 602, 691, 693, 727, 729, 746, 844
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 322, 744, 842
FauI CCCGC 1 cut(s) 191
FauNDI CATATG 2 cut(s) 691, 727
FbaI TGATCA 2 cut(s) 706, 814
FokI GGATG 4 cut(s) 116, 255, 271, 491
FspBI CTAG 1 cut(s) 390
HaeIII GGCC 3 cut(s) 54, 224, 589
HapII CCGG 2 cut(s) 240, 638
Hin1II CATG 3 cut(s) 326, 748, 846
HinfI GANTC 3 cut(s) 517, 659, 668
HpaII CCGG 2 cut(s) 240, 638
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 5 cut(s) 34, 43, 402, 457, 514
Hpy8I GTNNAC 1 cut(s) 363
HpyCH4III ACNGT 2 cut(s) 89, 777
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 5 cut(s) 322, 363, 538, 617, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 6 cut(s) 380, 399, 465, 567, 672, 678
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 3 cut(s) 326, 748, 846
Kpn2I TCCGGA 1 cut(s) 637
Ksp22I TGATCA 2 cut(s) 706, 814
LmnI GCTCC 1 cut(s) 195
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 191
MbiI CCGCTC 1 cut(s) 198
MboII GAAGA 9 cut(s) 71, 118, 382, 415, 421, 563, 638, 743, 797
MflI RGATCY 2 cut(s) 493, 640
MhlI GDGCHC 3 cut(s) 365, 400, 701
MluCI AATT 4 cut(s) 269, 508, 710, 764
MlyI GAGTC 3 cut(s) 526, 668, 677
Mph1103I ATGCAT 1 cut(s) 324
MroI TCCGGA 1 cut(s) 637
MseI TTAA 1 cut(s) 839
MslI CAYNNNNRTG 2 cut(s) 21, 726
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 2 cut(s) 240, 638
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeI CATATG 2 cut(s) 691, 727
NlaIII CATG 3 cut(s) 326, 748, 846
NlaIV GGNNCC 2 cut(s) 94, 642
NsiI ATGCAT 1 cut(s) 324
PagI TCATGA 1 cut(s) 744
PasI CCCWGGG 1 cut(s) 66
PleI GAGTC 3 cut(s) 525, 667, 676
PpsI GAGTC 3 cut(s) 525, 667, 676
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 94, 642
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 2 cut(s) 493, 640
RsaI GTAC 3 cut(s) 38, 278, 329
RsaNI GTAC 3 cut(s) 37, 277, 328
RseI CAYNNNNRTG 2 cut(s) 21, 726
SaqAI TTAA 1 cut(s) 839
Sau96I GGNCC 1 cut(s) 587
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 3 cut(s) 526, 668, 677
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 3 cut(s) 365, 400, 701
SetI ASST 8 cut(s) 30, 194, 278, 368, 381, 391, 743, 803
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 796
SmiMI CAYNNNNRTG 2 cut(s) 21, 726
Sse9I AATT 4 cut(s) 269, 508, 710, 764
SsiI CCGC 3 cut(s) 163, 198, 759
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 2 cut(s) 89, 777
TaiI ACGT 1 cut(s) 194
TaqI TCGA 5 cut(s) 20, 209, 483, 520, 662
TasI AATT 4 cut(s) 269, 508, 710, 764
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 1 cut(s) 839
Tru9I TTAA 1 cut(s) 839
TscAI CASTG 3 cut(s) 349, 453, 817
TspDTI ATGAA 4 cut(s) 564, 714, 733, 744
TspRI CASTG 3 cut(s) 349, 453, 817
VneI GTGCAC 1 cut(s) 361
XapI RAATTY 2 cut(s) 269, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.