RLG00000010084

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000418
Physical Location & Seq
Forward (+)
62812619 .. 62814032
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010084

Sequence Viewer

Length: 918 bp
ATGGGTTATCCGATCGGGTACAGGTTTCATCCCACAGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATTCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCCCAAAACGCAAGAAGTTGAACCCAATGGCAAGCGGATTGATCGCAAAGTACGAGGGTGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTACGAGTTGTGTGCCACTGATTTCTTGGTGTTGTGCACCTTGAACAAGAACCCAAGAAAAGCTAGAGCTAGTAGTGCTCAGACCAATGGTAAGAGAGGAAGAGGATTGTTGATAATCAACCGAGCAGTGTATTGCTCGGTGAGAATTGGTGTGGTCGAAACAGTTGGATTCAAAAGAAGTGAATTGGATGTGTTGCACTACTATGACATAGGTGAAGAAAGTCTGCGGCTCGCTGCTGCTACTCCTCCATTTCCTTTGGTTGTGAAAAACATTCCGTTGGAGAAAGAACAAAAATTTCCTACTGAGTTTCCTCATTTGATTGATAGATACTTTGGCGAGTCAGGTGGTGGCTGTTTGTATTTGATTGAGGTTTTTGAGCATTGTAAGACTCAATTTGAGGTGATGGAGATGGAGAGGGACTACTCTGGCTGGTTTGTCAAGTACCATGTTGATCTTAGTCCGGTAGTCGCACCTCTCCCTGGACAGGATCCAAATGCTTTTGTTGTCTTGTTCCTTTCAGGAGACGTGGAAACAGATGGTGAGGATTCTTCGACTGATCTTTGGTTGCAGATGCCGGACCTTGATATGAAGGTACTAGTAGAAATCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

306

Amino Acids

34.76

Weight (kDa)

4.8

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 74 5.8e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 240, 532
AclWI GGATC 3 cut(s) 266, 788, 801
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 599
AfaI GTAC 5 cut(s) 20, 257, 308, 749, 900
AfiI CCNNNNNNNGG 3 cut(s) 70, 785, 790
AgsI TTSAA 3 cut(s) 226, 349, 478
AhlI ACTAGT 1 cut(s) 901
AjiI CACGTC 1 cut(s) 832
AjnI CCWGG 3 cut(s) 74, 143, 784
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 368, 374
AluI AGCT 2 cut(s) 368, 374
Alw21I GWGCWC 2 cut(s) 344, 385
Alw26I GTCTC 1 cut(s) 822
Alw44I GTGCAC 1 cut(s) 340
AlwI GGATC 3 cut(s) 266, 788, 801
AoxI GGCC 2 cut(s) 72, 130
ApaLI GTGCAC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 539, 542
ApoI RAATTY 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 72, 883
AsuHPI GGTGA 4 cut(s) 457, 530, 718, 857
AvaII GGWCC 1 cut(s) 883
BaeGI GKGCMC 1 cut(s) 344
BamHI GGATCC 1 cut(s) 793
Bbv12I GWGCWC 2 cut(s) 344, 385
BbvI GCAGC 2 cut(s) 526, 529
BccI CCATC 5 cut(s) 73, 179, 703, 709, 836
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 3 cut(s) 76, 145, 786
BcoDI GTCTC 1 cut(s) 822
BcuI ACTAGT 1 cut(s) 901
BfaI CTAG 3 cut(s) 369, 375, 902
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 533, 540, 543
BlsI GCNGC 3 cut(s) 534, 541, 544
Bme1390I CCNGG 3 cut(s) 76, 145, 786
Bme18I GGWCC 1 cut(s) 883
BmgBI CACGTC 1 cut(s) 832
BmgT120I GGNCC 2 cut(s) 72, 883
BmiI GGNNCC 2 cut(s) 172, 795
BmrFI CCNGG 3 cut(s) 76, 145, 786
BmsI GCATC 2 cut(s) 288, 867
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 143, 144, 784
BsaWI WCCGGW 1 cut(s) 766
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 785, 790
Bse1I ACTGG 1 cut(s) 913
BseBI CCWGG 3 cut(s) 76, 145, 786
BseDI CCNNGG 3 cut(s) 143, 144, 784
BseGI GGATG 4 cut(s) 28, 84, 187, 499
BseLI CCNNNNNNNGG 3 cut(s) 70, 785, 790
BseMII CTCAG 2 cut(s) 398, 600
BseNI ACTGG 1 cut(s) 913
BseRI GAGGAG 1 cut(s) 540
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 2 cut(s) 526, 529
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 74, 132
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 344, 385
BsiSI CCGG 2 cut(s) 767, 881
BslFI GGGAC 2 cut(s) 170, 737
BslI CCNNNNNNNGG 3 cut(s) 70, 785, 790
BsmAI GTCTC 1 cut(s) 822
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 2 cut(s) 170, 737
BsnI GGCC 2 cut(s) 74, 132
Bsp1286I GDGCHC 2 cut(s) 344, 385
Bsp143I GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
BspACI CCGC 2 cut(s) 240, 532
BspANI GGCC 2 cut(s) 74, 132
BspCNI CTCAG 2 cut(s) 397, 601
BspLI GGNNCC 2 cut(s) 172, 795
BspPI GGATC 3 cut(s) 266, 788, 801
BsrI ACTGG 1 cut(s) 913
BssECI CCNNGG 3 cut(s) 143, 144, 784
BssMI GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
Bst2UI CCWGG 3 cut(s) 76, 145, 786
Bst4CI ACNGT 2 cut(s) 167, 469
Bst6I CTCTTC 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 238, 537
BstDEI CTNAG 3 cut(s) 384, 609, 761
BstF5I GGATG 4 cut(s) 28, 84, 187, 499
BstKTI GATC 7 cut(s) 15, 108, 249, 274, 760, 796, 865
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 3 cut(s) 76, 145, 786
BstSCI CCNGG 3 cut(s) 74, 143, 784
BstSLI GKGCMC 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 526, 529
BstX2I RGATCY 2 cut(s) 105, 793
BstYI RGATCY 2 cut(s) 105, 793
BsuRI GGCC 2 cut(s) 74, 132
BtrI CACGTC 1 cut(s) 832
BtsCI GGATG 4 cut(s) 28, 84, 187, 499
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 321, 438
Cac8I GCNNGC 2 cut(s) 238, 537
Cfr13I GGNCC 2 cut(s) 72, 883
Csp6I GTAC 5 cut(s) 19, 256, 307, 748, 899
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 1 cut(s) 752
CviJI RGCY 8 cut(s) 74, 132, 193, 368, 374, 535, 657, 735
CviKI_1 RGCY 8 cut(s) 74, 132, 193, 368, 374, 535, 657, 735
CviQI GTAC 5 cut(s) 19, 256, 307, 748, 899
DdeI CTNAG 3 cut(s) 384, 609, 761
DpnI GATC 7 cut(s) 14, 107, 248, 273, 759, 795, 864
DpnII GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 883
EcoRII CCWGG 3 cut(s) 74, 143, 784
Esp3I CGTCTC 1 cut(s) 822
FaeI CATG 1 cut(s) 755
FaiI YATR 4 cut(s) 510, 515, 753, 893
FaqI GGGAC 2 cut(s) 170, 737
FatI CATG 1 cut(s) 751
Fnu4HI GCNGC 3 cut(s) 533, 540, 543
FokI GGATG 4 cut(s) 15, 91, 194, 506
Fsp4HI GCNGC 3 cut(s) 533, 540, 543
FspBI CTAG 3 cut(s) 369, 375, 902
GluI GCNGC 3 cut(s) 533, 540, 543
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 74, 132
HapII CCGG 2 cut(s) 767, 881
Hin1II CATG 1 cut(s) 755
HinfI GANTC 4 cut(s) 474, 644, 694, 851
HpaII CCGG 2 cut(s) 767, 881
HphI GGTGA 4 cut(s) 457, 530, 718, 857
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 4 cut(s) 12, 112, 121, 387
Hpy188III TCNNGA 2 cut(s) 275, 825
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 1 cut(s) 889
HpyCH4III ACNGT 2 cut(s) 167, 469
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 4 cut(s) 301, 342, 502, 874
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 3 cut(s) 384, 609, 761
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 1 cut(s) 755
Kzo9I GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
Lsp1109I GCAGC 2 cut(s) 526, 529
LweI GCATC 2 cut(s) 288, 867
MaeI CTAG 3 cut(s) 369, 375, 902
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 1 cut(s) 53
MalI GATC 7 cut(s) 14, 107, 248, 273, 759, 795, 864
MboI GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
MboII GAAGA 6 cut(s) 53, 149, 196, 417, 533, 846
MflI RGATCY 2 cut(s) 105, 793
MhlI GDGCHC 2 cut(s) 344, 385
MluCI AATT 4 cut(s) 450, 488, 599, 698
MlyI GAGTC 2 cut(s) 653, 688
MmeI TCCRAC 2 cut(s) 451, 564
MslI CAYNNNNRTG 2 cut(s) 99, 507
MspI CCGG 2 cut(s) 767, 881
MspR9I CCNGG 3 cut(s) 76, 145, 786
MvaI CCWGG 3 cut(s) 76, 145, 786
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
NlaIII CATG 1 cut(s) 755
NlaIV GGNNCC 2 cut(s) 172, 795
PasI CCCWGGG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 474, 851
PkrI GCNGC 3 cut(s) 534, 541, 544
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 2 cut(s) 652, 688
PpsI GAGTC 2 cut(s) 652, 688
Psp6I CCWGG 3 cut(s) 74, 143, 784
PspGI CCWGG 3 cut(s) 74, 143, 784
PspN4I GGNNCC 2 cut(s) 172, 795
PspPI GGNCC 2 cut(s) 72, 883
PsuI RGATCY 2 cut(s) 105, 793
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 5 cut(s) 20, 257, 308, 749, 900
RsaNI GTAC 5 cut(s) 19, 256, 307, 748, 899
RseI CAYNNNNRTG 2 cut(s) 99, 507
SatI GCNGC 3 cut(s) 533, 540, 543
Sau3AI GATC 7 cut(s) 12, 105, 246, 271, 757, 793, 862
Sau96I GGNCC 2 cut(s) 72, 883
SchI GAGTC 2 cut(s) 653, 688
ScrFI CCNGG 3 cut(s) 76, 145, 786
SduI GDGCHC 2 cut(s) 344, 385
SfaNI GCATC 2 cut(s) 288, 867
SinI GGWCC 1 cut(s) 883
SmiMI CAYNNNNRTG 2 cut(s) 99, 507
SpeI ACTAGT 1 cut(s) 901
Sse9I AATT 4 cut(s) 450, 488, 599, 698
SsiI CCGC 2 cut(s) 240, 532
SspMI CTAG 3 cut(s) 369, 375, 902
StyD4I CCNGG 3 cut(s) 74, 143, 784
TaaI ACNGT 2 cut(s) 167, 469
TaiI ACGT 1 cut(s) 834
TaqI TCGA 3 cut(s) 98, 462, 857
TasI AATT 4 cut(s) 450, 488, 599, 698
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 474, 851
TscAI CASTG 2 cut(s) 328, 438
TseI GCWGC 2 cut(s) 539, 542
TspDTI ATGAA 3 cut(s) 17, 54, 908
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 2 cut(s) 328, 438
VneI GTGCAC 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 883
XapI RAATTY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XspI CTAG 3 cut(s) 369, 375, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.