Rh1DG146800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000418
Physical Location & Seq
Reverse (-)
30757107 .. 30757439
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG146800.1

Sequence Viewer

Length: 333 bp
ATGAAATTCAGTGAGGATAAGGAGGATATATACATAAAGACAAAGACTTTCAAAAGAAAAAAAATGGAACCTCCTAAACAAAAACAACAACTAATGTTGCCCTCTACCTCTTACTTGTTTGAGCAGCAGTTTGATCAATCTAAAATATTGTTTGATATCGATGAGCTCTGTTATATTGATGATCAACAGGAGAGCAATGATGATCTCATGGCTTCATGTGCTCCATCATTTGTTACTGATAATCAGCTTGAGGTTGTTAAGGTAGAGAAGGAGGGCAGTAATGATGATCTCATGGCCTCAGCTGATCAACCGTTATCTACTAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.73

Weight (kDa)

4.32

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 5
AgsI TTSAA 1 cut(s) 52
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 3 cut(s) 166, 247, 302
AluI AGCT 3 cut(s) 166, 247, 302
Alw21I GWGCWC 2 cut(s) 168, 223
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 5
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 168, 223
BbvCI CCTCAGC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 232
BclI TGATCA 3 cut(s) 133, 181, 304
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 159
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 168, 223
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 168, 223
Bsp143I GATC 5 cut(s) 133, 181, 202, 286, 304
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 311
BspDI ATCGAT 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 202
BssMI GATC 5 cut(s) 133, 181, 202, 286, 304
Bst4CI ACNGT 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 298
BstKTI GATC 5 cut(s) 136, 184, 205, 289, 307
BstMBI GATC 5 cut(s) 133, 181, 202, 286, 304
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 159
CviAII CATG 3 cut(s) 208, 216, 292
CviJI RGCY 5 cut(s) 166, 212, 247, 296, 302
CviKI_1 RGCY 5 cut(s) 166, 212, 247, 296, 302
DdeI CTNAG 1 cut(s) 298
DpnI GATC 5 cut(s) 135, 183, 204, 288, 306
DpnII GATC 5 cut(s) 133, 181, 202, 286, 304
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 166
EcoRV GATATC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 3 cut(s) 211, 219, 295
FaiI YATR 7 cut(s) 29, 31, 35, 174, 209, 217, 293
FatI CATG 3 cut(s) 207, 215, 291
FbaI TGATCA 3 cut(s) 133, 181, 304
Fnu4HI GCNGC 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 296
Hin1II CATG 3 cut(s) 211, 219, 295
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 3 cut(s) 211, 219, 295
Ksp22I TGATCA 3 cut(s) 133, 181, 304
Kzo9I GATC 5 cut(s) 133, 181, 202, 286, 304
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 135, 183, 204, 288, 306
MboI GATC 5 cut(s) 133, 181, 202, 286, 304
MhlI GDGCHC 2 cut(s) 168, 223
MluCI AATT 1 cut(s) 5
MnlI CCTC 8 cut(s) 7, 16, 81, 112, 118, 244, 265, 307
MseI TTAA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 5 cut(s) 133, 181, 202, 286, 304
NlaIII CATG 3 cut(s) 211, 219, 295
NlaIV GGNNCC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 5 cut(s) 133, 181, 202, 286, 304
SduI GDGCHC 2 cut(s) 168, 223
SetI ASST 7 cut(s) 73, 110, 168, 249, 255, 264, 304
SgeI CNNG 6 cut(s) 127, 200, 220, 228, 260, 304
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 1 cut(s) 5
SspI AATATT 1 cut(s) 147
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 5
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 17, 204
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.