Rmu_sc0001035.1_g000078
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001035.1
OG0000418
Physical Location & Seq
Forward (+)
383690 .. 384364
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001035.1_g000078.1.cds

Sequence Viewer

Length: 495 bp
atggcaattctctccaacaaactcccagtcggggtcaggttccttcccactgaccaggaactgctcgattactatctccgctcaaggatcgccatgggtgaccagtttcgcaccgatttcgtcgccgattgtcctcatttcttcggagacaaggagccctgggttgtctggcagatctacggcggcgctgagtccaagaaagtggaggatgaaaacactctctatttcttcaccaatcggagaaggctgagtcccaccgctaagagatttgatcggaaagtgggttccggcacttggagtgctcagtatgcgagagaagttgaggatgatggtgttgttcttggcctcaagcgggagtttcgatacgagggcggatgtgacgagagtcacaacgacggttggttgatgcaagagtttcagcttgatgatgattccgatttggagtaccacttctttgataatctggttacaggagctaggagtaccacttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

164

Amino Acids

19.05

Weight (kDa)

4.81

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 5 cut(s) 79, 183, 258, 352, 372
AclWI GGATC 1 cut(s) 95
AfaI GTAC 2 cut(s) 446, 484
AfiI CCNNNNNNNGG 3 cut(s) 31, 294, 352
AjnI CCWGG 2 cut(s) 54, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 2 cut(s) 421, 476
AluI AGCT 2 cut(s) 421, 476
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 110, 223
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 2 cut(s) 56, 160
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 1 cut(s) 174
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 56, 160
BmiI GGNNCC 3 cut(s) 41, 156, 286
BmrFI CCNGG 2 cut(s) 56, 160
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 67, 332
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 93, 158, 159
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 294, 352
Bse1I ACTGG 2 cut(s) 26, 103
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 56, 160
BseDI CCNNGG 3 cut(s) 93, 158, 159
BseGI GGATG 3 cut(s) 214, 331, 380
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 31, 294, 352
BseMII CTCAG 3 cut(s) 180, 239, 317
BseNI ACTGG 2 cut(s) 26, 103
BshFI GGCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 31, 294, 352
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 159, 304
Bsp143I GATC 3 cut(s) 87, 174, 271
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 5 cut(s) 79, 183, 258, 352, 372
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 3 cut(s) 181, 240, 316
BspLI GGNNCC 3 cut(s) 41, 156, 286
BspPI GGATC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 81
BsrI ACTGG 2 cut(s) 26, 103
BssECI CCNNGG 3 cut(s) 93, 158, 159
BssMI GATC 3 cut(s) 87, 174, 271
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 56, 160
Bst4CI ACNGT 1 cut(s) 398
BstDEI CTNAG 5 cut(s) 189, 248, 261, 303, 492
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 3 cut(s) 214, 331, 380
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 90, 177, 274
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 3 cut(s) 87, 174, 271
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 2 cut(s) 56, 160
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 54, 158
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 3 cut(s) 214, 331, 380
BtsIMutI CAGTG 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 445, 483
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 157, 247, 345, 421, 476
CviKI_1 RGCY 5 cut(s) 157, 247, 345, 421, 476
CviQI GTAC 2 cut(s) 445, 483
DdeI CTNAG 5 cut(s) 189, 248, 261, 303, 492
DpnI GATC 3 cut(s) 89, 176, 273
DpnII GATC 3 cut(s) 87, 174, 271
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 54, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 309
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 3 cut(s) 221, 338, 387
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 4 cut(s) 191, 250, 385, 431
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 110, 223
Hpy188I TCNGA 4 cut(s) 146, 240, 276, 436
Hpy99I CGWCG 2 cut(s) 125, 398
HpyAV CCTTC 2 cut(s) 53, 237
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 1 cut(s) 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 5 cut(s) 189, 248, 261, 303, 492
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 3 cut(s) 87, 174, 271
LmnI GCTCC 2 cut(s) 154, 473
LweI GCATC 1 cut(s) 396
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 4 cut(s) 98, 377, 386, 466
MalI GATC 3 cut(s) 89, 176, 273
MbiI CCGCTC 1 cut(s) 81
MboI GATC 3 cut(s) 87, 174, 271
MboII GAAGA 2 cut(s) 133, 220
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 159, 304
MluCI AATT 1 cut(s) 6
MlyI GAGTC 3 cut(s) 200, 259, 394
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 144, 199, 316, 356, 361
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 56, 160
MvaI CCWGG 2 cut(s) 56, 160
MwoI GCNNNNNNNGC 1 cut(s) 308
NcoI CCATGG 1 cut(s) 93
NdeII GATC 3 cut(s) 87, 174, 271
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 41, 156, 286
NmuCI GTSAC 3 cut(s) 98, 377, 386
PasI CCCWGGG 1 cut(s) 159
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 3 cut(s) 199, 258, 393
PpsI GAGTC 3 cut(s) 199, 258, 393
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 54, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 54, 158
PspN4I GGNNCC 3 cut(s) 41, 156, 286
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 2 cut(s) 446, 484
RsaNI GTAC 2 cut(s) 445, 483
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 3 cut(s) 87, 174, 271
SchI GAGTC 3 cut(s) 200, 259, 394
ScrFI CCNGG 2 cut(s) 56, 160
SduI GDGCHC 2 cut(s) 159, 304
SetI ASST 3 cut(s) 41, 423, 478
SfaNI GCATC 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 82, 347
SmoI CTYRAG 2 cut(s) 82, 347
Sse9I AATT 1 cut(s) 6
SsiI CCGC 5 cut(s) 79, 183, 258, 352, 372
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 54, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 66, 361
TasI AATT 1 cut(s) 6
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 431
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 3 cut(s) 98, 377, 386
Tsp45I GTSAC 3 cut(s) 98, 377, 386
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 1 cut(s) 55
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.