RLG00000025429
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000418
Physical Location & Seq
Reverse (-)
45724996 .. 45725997
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025429

Sequence Viewer

Length: 1002 bp
ATGGCACCAACAATGCAAAGGTATCCGAAAGGCATGAGGTTTCATCCTACAGACTTGGAACTTGTTGATTATTTCCTCCACAACAAGGCCGATGCCGATGAGAAGGGTTATTACTCCAGCTTAATCTATGAATGTAACGATTTTTATGGTGAAAAAGAGCCGTGGGTTATTTGGAACATGTATGGGGGTTCTACATATGAGGAAGGAGAACCCCTCTACTTCTACACCAAGCGCATCAAACAGAATAGTAATGGCAAACGCTTTGCTCGGAAGGTAGGCTCCGGTACATGGAGTGGAGAGTACTCGAAAGAGGTTCTTGCTGCCGATGATGGTAAAACCAAAATTGGGACAATGAGGAACTTTCGCTACGAGAAGGGATGTGATTCTGGTCAAAACGGTGCATGGCTCATGCACGAGTACGAGAGTGAGTTCGACAAGAACGGGGAAGATGATTATGTAATTTGCGTTTTGAGAAAAAATCCAAGAAAAGCTCCAGCACTACGACAACCTGATCAGAGAGATATTGAAAGTGCAAAGAAGAGTAGTGTCAATGACAAAAAGAGAAAGAGGATGAAGTCGGACGACGTTGTTGATCATCAACAGAGAAAGCTGAACAAGCAACTAAAGGATGATCGTGAACTGATAAAGATCGAAGAGGAAGAAAGAAAGGAAGAGAGTTACGACGAACAAGGCCGTAGCAGTTGTACGGAGCTGCCCTATCATCATGACCAGGATAATAATACTTATTATCCTGATAATCATAATTTTTATTCGGATTATTATTTTCCAGAGCTCCTTGGCAATAATTATGATGATGGTGTCACTATAGACGAACTCCTTGGACCAATTTCAGATGATTCTGTATACTACAAGTCCATCCCATTTCAGGATCAGTTATATCACGGTGACGATGACAGCTTCAGCTTCGTAGATTACTCGGATGGAGGGGTGTCACAGCTGCCTAACGATCAACACACTGTTGATTACCTGGGGAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

334

Amino Acids

38.97

Weight (kDa)

4.9

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 7.9e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 864
AclWI GGATC 1 cut(s) 897
AcuI CTGAAG 1 cut(s) 904
AfaI GTAC 4 cut(s) 286, 302, 419, 706
AfiI CCNNNNNNNGG 4 cut(s) 85, 288, 345, 886
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 527
AjnI CCWGG 2 cut(s) 729, 987
AluBI AGCT 8 cut(s) 120, 491, 610, 712, 793, 918, 924, 958
AluI AGCT 8 cut(s) 120, 491, 610, 712, 793, 918, 924, 958
Alw21I GWGCWC 1 cut(s) 795
AlwI GGATC 1 cut(s) 897
AoxI GGCC 2 cut(s) 87, 691
ApeKI GCWGC 3 cut(s) 320, 712, 958
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 842
AsuHPI GGTGA 2 cut(s) 161, 917
AvaII GGWCC 1 cut(s) 842
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 795
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BauI CACGAG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 307, 699, 945
BccI CCATC 4 cut(s) 323, 809, 884, 935
BceAI ACGGC 2 cut(s) 145, 678
BciT130I CCWGG 2 cut(s) 731, 989
BciVI GTATCC 1 cut(s) 33
BclI TGATCA 2 cut(s) 511, 592
BfmI CTRYAG 2 cut(s) 48, 825
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 3 cut(s) 321, 713, 959
BlsI GCNGC 3 cut(s) 322, 714, 960
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 731, 989
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 6, 280
BmrFI CCNGG 2 cut(s) 731, 989
BmsI GCATC 2 cut(s) 82, 243
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpmI CTGGAG 2 cut(s) 100, 477
BsaBI GATNNNNATC 1 cut(s) 647
BsaJI CCNNGG 4 cut(s) 161, 796, 838, 988
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 288, 345, 886
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 2 cut(s) 731, 989
BseDI CCNNGG 4 cut(s) 161, 796, 838, 988
BseGI GGATG 6 cut(s) 43, 383, 576, 634, 876, 946
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 4 cut(s) 85, 288, 345, 886
BseXI GCAGC 3 cut(s) 307, 699, 945
BshFI GGCC 2 cut(s) 89, 693
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 795
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 4 cut(s) 85, 288, 345, 886
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 2 cut(s) 89, 693
Bsp1286I GDGCHC 1 cut(s) 795
Bsp143I GATC 6 cut(s) 511, 592, 631, 648, 889, 967
BspANI GGCC 2 cut(s) 89, 693
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 6, 280
BspPI GGATC 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 161, 796, 838, 988
BssMI GATC 6 cut(s) 511, 592, 631, 648, 889, 967
BssNAI GTATAC 1 cut(s) 865
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 2 cut(s) 796, 838
Bst1107I GTATAC 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 2 cut(s) 731, 989
Bst4CI ACNGT 3 cut(s) 398, 905, 979
Bst6I CTCTTC 3 cut(s) 533, 648, 666
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 6 cut(s) 43, 383, 576, 634, 876, 946
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 6 cut(s) 514, 595, 634, 651, 892, 970
BstMBI GATC 6 cut(s) 511, 592, 631, 648, 889, 967
BstMWI GCNNNNNNNGC 1 cut(s) 616
BstNI CCWGG 2 cut(s) 731, 989
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 729, 987
BstSFI CTRYAG 2 cut(s) 48, 825
BstV1I GCAGC 3 cut(s) 307, 699, 945
BstZ17I GTATAC 1 cut(s) 865
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 89, 693
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 6 cut(s) 43, 383, 576, 634, 876, 946
BtsIMutI CAGTG 1 cut(s) 975
CciI TCATGA 1 cut(s) 724
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 4 cut(s) 285, 301, 418, 705
CviAII CATG 6 cut(s) 34, 178, 288, 402, 409, 725
CviQI GTAC 4 cut(s) 285, 301, 418, 705
DpnI GATC 6 cut(s) 513, 594, 633, 650, 891, 969
DpnII GATC 6 cut(s) 511, 592, 631, 648, 889, 967
Eam1104I CTCTTC 3 cut(s) 533, 648, 666
EarI CTCTTC 3 cut(s) 533, 648, 666
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 2 cut(s) 796, 838
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 842
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 904
EcoICRI GAGCTC 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 729, 987
EcoT14I CCWWGG 2 cut(s) 796, 838
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 2 cut(s) 796, 838
FaeI CATG 6 cut(s) 37, 181, 291, 405, 412, 728
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 361
FatI CATG 6 cut(s) 33, 177, 287, 401, 408, 724
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 2 cut(s) 511, 592
FblI GTMKAC 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 321, 713, 959
FokI GGATG 6 cut(s) 30, 390, 583, 641, 863, 953
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 3 cut(s) 321, 713, 959
GlaI GCGC 1 cut(s) 233
GluI GCNGC 3 cut(s) 321, 713, 959
GsuI CTGGAG 2 cut(s) 100, 477
HaeIII GGCC 2 cut(s) 89, 693
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 234
Hin1II CATG 6 cut(s) 37, 181, 291, 405, 412, 728
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 2 cut(s) 383, 857
HpaII CCGG 1 cut(s) 282
HphI GGTGA 2 cut(s) 161, 917
Hpy166II GTNNAC 2 cut(s) 638, 865
Hpy188I TCNGA 7 cut(s) 27, 270, 516, 580, 775, 853, 940
Hpy188III TCNNGA 5 cut(s) 635, 725, 752, 788, 887
Hpy8I GTNNAC 2 cut(s) 638, 865
Hpy99I CGWCG 2 cut(s) 587, 686
HpyAV CCTTC 4 cut(s) 97, 197, 265, 367
HpyCH4III ACNGT 3 cut(s) 398, 905, 979
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 4 cut(s) 16, 401, 412, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 616
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 6 cut(s) 37, 181, 291, 405, 412, 728
HspAI GCGC 1 cut(s) 232
Ksp22I TGATCA 2 cut(s) 511, 592
Kzo9I GATC 6 cut(s) 511, 592, 631, 648, 889, 967
LmnI GCTCC 4 cut(s) 284, 496, 709, 798
Lsp1109I GCAGC 3 cut(s) 307, 699, 945
LweI GCATC 2 cut(s) 82, 243
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 5 cut(s) 134, 677, 820, 905, 951
MalI GATC 6 cut(s) 513, 594, 633, 650, 891, 969
MboI GATC 6 cut(s) 511, 592, 631, 648, 889, 967
MboII GAAGA 5 cut(s) 458, 550, 665, 671, 683
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 5 cut(s) 342, 459, 763, 805, 846
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 9 cut(s) 30, 86, 193, 224, 304, 348, 561, 649, 938
MseI TTAA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 958
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 731, 989
MvaI CCWGG 2 cut(s) 731, 989
MwoI GCNNNNNNNGC 1 cut(s) 616
NdeI CATATG 1 cut(s) 196
NdeII GATC 6 cut(s) 511, 592, 631, 648, 889, 967
NlaIII CATG 6 cut(s) 37, 181, 291, 405, 412, 728
NlaIV GGNNCC 2 cut(s) 6, 280
NmuCI GTSAC 3 cut(s) 820, 905, 951
NspI RCATGY 1 cut(s) 181
PagI TCATGA 1 cut(s) 724
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 2 cut(s) 383, 857
PkrI GCNGC 3 cut(s) 322, 714, 960
PscI ACATGT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 729, 987
PspGI CCWGG 2 cut(s) 729, 987
PspN4I GGNNCC 2 cut(s) 6, 280
PspPI GGNCC 1 cut(s) 842
PsrI GAACNNNNNNTAC 2 cut(s) 350, 382
PvuII CAGCTG 1 cut(s) 958
RsaI GTAC 4 cut(s) 286, 302, 419, 706
RsaNI GTAC 4 cut(s) 285, 301, 418, 705
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 3 cut(s) 321, 713, 959
Sau3AI GATC 6 cut(s) 511, 592, 631, 648, 889, 967
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 731, 989
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 2 cut(s) 82, 243
SfcI CTRYAG 2 cut(s) 48, 825
SinI GGWCC 1 cut(s) 842
Sse9I AATT 5 cut(s) 342, 459, 763, 805, 846
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 2 cut(s) 729, 987
StyI CCWWGG 2 cut(s) 796, 838
TaaI ACNGT 3 cut(s) 398, 905, 979
TaiI ACGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 305, 432, 651
TasI AATT 5 cut(s) 342, 459, 763, 805, 846
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 2 cut(s) 383, 857
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 3 cut(s) 820, 905, 951
TseI GCWGC 3 cut(s) 320, 712, 958
Tsp45I GTSAC 3 cut(s) 820, 905, 951
TspDTI ATGAA 3 cut(s) 32, 144, 587
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 842
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 864
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.