RLG00000014094

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000418
Physical Location & Seq
Forward (+)
46985138 .. 46986078
941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014094

Sequence Viewer

Length: 711 bp
ATGGGTTGTTTGATCGGGTACAGGTTTCATCCCACAGATGAAGAACTTAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAGGTAGGCTCGGGAACGTGGAGGGGGCAGTTTTCCAGAGAGGTTGTGGCCGCGGATAGAGACACCGGATGCCGTATTAATGGGATTAGGAGGGAATTTAGGTACGAGGGCGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCACTGATGCCTTGGTGTTGTGCATCTTGAAGAAGAACCCAAGAAAAGCTGCTCAGACCAATGATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGCTGTTGCAAGTTGATGATTATCAGATCCTATATCCTGATAATGGGCCTCTATTTTTTGTGGAGGAACTTCTTGCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAATACTTGGACTGCAATGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

237

Amino Acids

27.09

Weight (kDa)

4.44

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 100 1.5e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 5 cut(s) 127, 189, 191, 249, 621
AclWI GGATC 6 cut(s) 251, 424, 497, 510, 552, 588
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 233, 626
AcuI CTGAAG 1 cut(s) 643
AfaI GTAC 2 cut(s) 20, 242
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 112, 334, 632
AluBI AGCT 4 cut(s) 353, 406, 603, 663
AluI AGCT 4 cut(s) 353, 406, 603, 663
Alw26I GTCTC 4 cut(s) 192, 371, 537, 543
AlwI GGATC 6 cut(s) 251, 424, 497, 510, 552, 588
Ama87I CYCGRG 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 2 cut(s) 186, 449
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 233, 626
AseI ATTAAT 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 148
BamHI GGATCC 1 cut(s) 502
BbsI GAAGAC 2 cut(s) 600, 654
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 195
BciVI GTATCC 1 cut(s) 679
BclI TGATCA 2 cut(s) 568, 676
BcoDI GTCTC 4 cut(s) 192, 371, 537, 543
BfuI GTATCC 1 cut(s) 679
BisI GCNGC 2 cut(s) 189, 354
BlsI GCNGC 2 cut(s) 190, 355
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 58, 504
BmsI GCATC 4 cut(s) 197, 273, 301, 336
BpiI GAAGAC 2 cut(s) 600, 654
BplI GAGNNNNNCTC 2 cut(s) 66, 98
Bpu14I TTCGAA 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 189, 315
BsaWI WCCGGW 2 cut(s) 203, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 672
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 189, 315
BseGI GGATG 3 cut(s) 28, 73, 212
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 3 cut(s) 371, 548, 554
BseNI ACTGG 1 cut(s) 672
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 188, 451
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 2 cut(s) 204, 500
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 4 cut(s) 192, 371, 537, 543
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 2 cut(s) 188, 451
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 499
BspACI CCGC 5 cut(s) 127, 189, 191, 249, 621
BspANI GGCC 2 cut(s) 188, 451
BspCNI CTCAG 3 cut(s) 370, 547, 553
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 58, 504
BspPI GGATC 6 cut(s) 251, 424, 497, 510, 552, 588
BspT104I TTCGAA 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 700
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 2 cut(s) 189, 315
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 53, 639
Bst6I CTCTTC 2 cut(s) 369, 513
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 3 cut(s) 357, 534, 540
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 28, 73, 212
BstFNI CGCG 1 cut(s) 191
BstMAI GTCTC 4 cut(s) 192, 371, 537, 543
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 2 cut(s) 600, 654
BstX2I RGATCY 2 cut(s) 429, 502
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 2 cut(s) 429, 502
BsuI GTATCC 1 cut(s) 679
BsuRI GGCC 2 cut(s) 188, 451
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 28, 73, 212
BtsIMutI CAGTG 2 cut(s) 306, 679
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 606
Cfr13I GGNCC 1 cut(s) 449
Cfr42I CCGCGG 1 cut(s) 192
Csp6I GTAC 2 cut(s) 19, 241
CviAII CATG 2 cut(s) 607, 705
CviJI RGCY 8 cut(s) 79, 147, 188, 353, 406, 451, 603, 663
CviKI_1 RGCY 8 cut(s) 79, 147, 188, 353, 406, 451, 603, 663
CviQI GTAC 2 cut(s) 19, 241
DdeI CTNAG 3 cut(s) 357, 534, 540
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 369, 513
EarI CTCTTC 2 cut(s) 369, 513
Eco130I CCWWGG 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 2 cut(s) 610, 708
FaiI YATR 7 cut(s) 436, 553, 555, 589, 591, 608, 706
FaqI GGGAC 1 cut(s) 288
FatI CATG 2 cut(s) 606, 704
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 2 cut(s) 553, 589
FbaI TGATCA 2 cut(s) 568, 676
Fnu4HI GCNGC 2 cut(s) 189, 354
FokI GGATG 3 cut(s) 15, 80, 219
Fsp4HI GCNGC 2 cut(s) 189, 354
GluI GCNGC 2 cut(s) 189, 354
HaeIII GGCC 2 cut(s) 188, 451
HapII CCGG 2 cut(s) 204, 500
Hin1II CATG 2 cut(s) 610, 708
HinfI GANTC 3 cut(s) 391, 521, 530
HpaII CCGG 2 cut(s) 204, 500
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 360, 388, 429
HpyCH4III ACNGT 2 cut(s) 53, 639
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 5 cut(s) 286, 327, 412, 479, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 3 cut(s) 357, 534, 540
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 610, 708
Kpn2I TCCGGA 1 cut(s) 499
Ksp22I TGATCA 2 cut(s) 568, 676
KspI CCGCGG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 4 cut(s) 197, 273, 301, 336
MaeII ACGT 1 cut(s) 155
MboII GAAGA 8 cut(s) 53, 82, 346, 349, 386, 500, 605, 659
MflI RGATCY 2 cut(s) 429, 502
MluCI AATT 5 cut(s) 233, 296, 382, 572, 626
MlyI GAGTC 3 cut(s) 400, 530, 539
MnlI CCTC 9 cut(s) 90, 153, 172, 222, 238, 460, 462, 498, 516
MroI TCCGGA 1 cut(s) 499
MseI TTAA 3 cut(s) 48, 216, 701
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 3 cut(s) 191, 406, 623
MspI CCGG 2 cut(s) 204, 500
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeI CATATG 2 cut(s) 553, 589
NlaIII CATG 2 cut(s) 610, 708
NlaIV GGNNCC 2 cut(s) 58, 504
NspV TTCGAA 1 cut(s) 294
PagI TCATGA 1 cut(s) 606
PkrI GCNGC 2 cut(s) 190, 355
PleI GAGTC 3 cut(s) 399, 529, 538
PpsI GAGTC 3 cut(s) 399, 529, 538
PshBI ATTAAT 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 58, 504
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 2 cut(s) 429, 502
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 2 cut(s) 20, 242
RsaNI GTAC 2 cut(s) 19, 241
RseI CAYNNNNRTG 1 cut(s) 588
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 48, 216, 701
SatI GCNGC 2 cut(s) 189, 354
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 3 cut(s) 400, 530, 539
SetI ASST 9 cut(s) 26, 144, 158, 183, 242, 355, 408, 605, 665
SfaNI GCATC 4 cut(s) 197, 273, 301, 336
Sfr303I CCGCGG 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 588
Sse9I AATT 5 cut(s) 233, 296, 382, 572, 626
SsiI CCGC 5 cut(s) 127, 189, 191, 249, 621
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 53, 639
TaiI ACGT 1 cut(s) 158
TaqI TCGA 3 cut(s) 294, 394, 524
TasI AATT 5 cut(s) 233, 296, 382, 572, 626
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 3 cut(s) 48, 216, 701
Tru9I TTAA 3 cut(s) 48, 216, 701
TscAI CASTG 2 cut(s) 313, 679
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 17, 54, 576, 595, 606
TspRI CASTG 2 cut(s) 313, 679
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 2 cut(s) 233, 626
XcmI CCANNNNNNNNNTGG 2 cut(s) 181, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.