FvH4_7g06570
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000418
Physical Location & Seq
Reverse (-)
6577049 .. 6578035
987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06570.t1

Sequence Viewer

Length: 987 bp
ATGGCTTACCCTCCTCTGGGTGTGGGTTTCCGATTTCGCCCAACTGACCGGGAATTGGTGGCTTACTATCTCCACAACCGGGCTGTTATGGGTGATCAATTTCAGTCCAGTTTCGTCTTCAATTGTCCAGATATCTACGGGCAAACTGAGCCCTGGATCATTTGGGACTTGTTCGGTGGAAACTTGATAGAAGAGGGAGAAGCTCTGTATTTCTTCACTCAGCGCAAGAAGTTGAATCCCAAAGCCAAAAGGTTTCATAGGAAAGTGGGTTCCGGAACTTGGAGTGCGCAGTCTAAAGATGATGTTGTTTCTGCTGATCATCATGTTATTGGTACTAAAAGAGAATTTCGATATGAGAAGGGATCTGATCCACTTCAAAATGGGGTTTGGTTGATGCAGGAGTACGAGCTCACATCCCTCAATGATATGGTGCTCTGCACCCTCAGGAAAAGCTCCAGACCCCCAGCAGAAACAGCTTCTTCATCTACTGCTGCTCCTCCTCTGAATCAGAGTGTTGATGAGAATTTTGGCAACAAAATGAAAAGGAAGATGAATTTCTGTGAGGAGGAGGAGGAGGAGGACTCTTGCAAAAGAAAAAAGTTGGAACCTCCTAAACCCTCTTACTTGTATGAGCAACACTTTGATGTTGATAAGCTCTTTGATTTTGATCATCAACCCAAGACTCCAGACCACATGGTTTCTGTTGCTCAACCTTTTGTTCAAGTTGAAAAGAGCAATGATGATCTCATCATGCCTTCATTAATTAGTGATGATGAAAGCCTTGAGGCTGTTCAGGTCATGGCCTCAGTTGGTCAATCAATATGTGCTGCTACTATTAATTCTCTAATGGATAGTCCAATTTCATTTGAGCATTTTGATGCTGAAGTTGATGAATTCCTTGGCTTGACTGCTGATGATTATAATAATAATAATAATGAGGATGGTATTTCTCAGTTCTCAAGTTCTGATTTAAGTTGTTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

329

Amino Acids

37.28

Weight (kDa)

4.72

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 137 6.4e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
Acc16I TGCGCA 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 272
AclWI GGATC 3 cut(s) 164, 362, 370
AcsI RAATTY 4 cut(s) 344, 523, 553, 893
AcuI CTGAAG 1 cut(s) 903
AfaI GTAC 2 cut(s) 334, 404
AfiI CCNNNNNNNGG 5 cut(s) 16, 17, 55, 79, 279
AgsI TTSAA 5 cut(s) 121, 235, 377, 722, 728
AjnI CCWGG 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 253, 285
AluBI AGCT 5 cut(s) 203, 409, 453, 476, 655
AluI AGCT 5 cut(s) 203, 409, 453, 476, 655
Alw21I GWGCWC 2 cut(s) 411, 435
AlwI GGATC 3 cut(s) 164, 362, 370
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 1 cut(s) 801
ApeKI GCWGC 2 cut(s) 491, 827
ApoI RAATTY 4 cut(s) 344, 523, 553, 893
AseI ATTAAT 2 cut(s) 761, 837
AspLEI GCGC 2 cut(s) 225, 289
AsuC2I CCSGG 2 cut(s) 50, 80
AsuHPI GGTGA 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 443
BanII GRGCYC 2 cut(s) 153, 411
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 411, 435
BbvI GCAGC 2 cut(s) 478, 814
BccI CCATC 1 cut(s) 935
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 3 cut(s) 94, 316, 667
BcnI CCSGG 2 cut(s) 50, 80
BisI GCNGC 2 cut(s) 492, 828
BlsI GCNGC 2 cut(s) 493, 829
Bme1390I CCNGG 3 cut(s) 50, 80, 154
BmiI GGNNCC 2 cut(s) 271, 606
BmrFI CCNGG 3 cut(s) 50, 80, 154
BmsI GCATC 2 cut(s) 384, 868
BpiI GAAGAC 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 2 cut(s) 439, 669
BpuEI CTTGAG 2 cut(s) 803, 943
BpuMI CCSGG 2 cut(s) 50, 80
BsaBI GATNNNNATC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 152, 898
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 17, 55, 79, 279
Bse1I ACTGG 1 cut(s) 108
Bse21I CCTNAGG 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 742
Bse8I GATNNNNATC 1 cut(s) 666
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 152, 898
BseGI GGATG 2 cut(s) 413, 946
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 5 cut(s) 16, 17, 55, 79, 279
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 5 cut(s) 138, 233, 457, 819, 965
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 7 cut(s) 486, 489, 578, 581, 584, 587, 590
BseXI GCAGC 2 cut(s) 478, 814
BseYI CCCAGC 1 cut(s) 463
BsgI GTGCAG 1 cut(s) 421
BshFI GGCC 1 cut(s) 803
BsiHKAI GWGCWC 2 cut(s) 411, 435
BsiSI CCGG 3 cut(s) 49, 79, 273
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 16, 17, 55, 79, 279
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 803
Bsp1286I GDGCHC 3 cut(s) 153, 411, 435
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
BspANI GGCC 1 cut(s) 803
BspCNI CTCAG 5 cut(s) 139, 232, 456, 818, 964
BspEI TCCGGA 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 271, 606
BspPI GGATC 3 cut(s) 164, 362, 370
BsrDI GCAATG 1 cut(s) 742
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 152, 898
BssMI GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
BssT1I CCWWGG 1 cut(s) 898
Bst2UI CCWGG 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 5 cut(s) 147, 219, 443, 805, 951
BstF5I GGATG 2 cut(s) 413, 946
BstHHI GCGC 2 cut(s) 225, 289
BstKTI GATC 7 cut(s) 97, 159, 319, 365, 370, 670, 745
BstMBI GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
BstMWI GCNNNNNNNGC 2 cut(s) 148, 473
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 3 cut(s) 48, 78, 152
BstV1I GCAGC 2 cut(s) 478, 814
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
Bsu36I CCTNAGG 1 cut(s) 443
BsuRI GGCC 1 cut(s) 803
BtsCI GGATG 2 cut(s) 413, 946
CfoI GCGC 2 cut(s) 225, 289
Csp6I GTAC 2 cut(s) 333, 403
CviAII CATG 4 cut(s) 323, 694, 751, 799
CviQI GTAC 2 cut(s) 333, 403
DdeI CTNAG 5 cut(s) 147, 219, 443, 805, 951
DpnI GATC 7 cut(s) 96, 158, 318, 364, 369, 669, 744
DpnII GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 898
Eco24I GRGCYC 2 cut(s) 153, 411
Eco32I GATATC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 903
Eco81I CCTNAGG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 893
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 898
EcoT38I GRGCYC 2 cut(s) 153, 411
ErhI CCWWGG 1 cut(s) 898
FaeI CATG 4 cut(s) 326, 697, 754, 802
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 322, 693, 750, 798
FbaI TGATCA 3 cut(s) 94, 316, 667
Fnu4HI GCNGC 2 cut(s) 492, 828
FokI GGATG 2 cut(s) 400, 953
FriOI GRGCYC 2 cut(s) 153, 411
Fsp4HI GCNGC 2 cut(s) 492, 828
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 224, 288
GluI GCNGC 2 cut(s) 492, 828
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 2 cut(s) 439, 669
HaeIII GGCC 1 cut(s) 803
HapII CCGG 3 cut(s) 49, 79, 273
HhaI GCGC 2 cut(s) 225, 289
Hin1II CATG 4 cut(s) 326, 697, 754, 802
Hin6I GCGC 2 cut(s) 223, 287
HinP1I GCGC 2 cut(s) 223, 287
HinfI GANTC 4 cut(s) 235, 505, 581, 682
HpaII CCGG 3 cut(s) 49, 79, 273
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 5 cut(s) 32, 367, 504, 510, 967
Hpy188III TCNNGA 5 cut(s) 128, 273, 445, 456, 686
HpyAV CCTTC 2 cut(s) 352, 765
HpyCH4V TGCA 3 cut(s) 397, 438, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 473
HpyF3I CTNAG 5 cut(s) 147, 219, 443, 805, 951
Hsp92II CATG 4 cut(s) 326, 697, 754, 802
HspAI GCGC 2 cut(s) 223, 287
Kpn2I TCCGGA 1 cut(s) 272
Ksp22I TGATCA 3 cut(s) 94, 316, 667
Kzo9I GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
LmnI GCTCC 2 cut(s) 458, 499
Lsp1109I GCAGC 2 cut(s) 478, 814
LweI GCATC 2 cut(s) 384, 868
MalI GATC 7 cut(s) 96, 158, 318, 364, 369, 669, 744
MboI GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
MboII GAAGA 5 cut(s) 109, 203, 205, 471, 559
MfeI CAATTG 1 cut(s) 121
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 153, 411, 435
MlyI GAGTC 2 cut(s) 575, 676
MmeI TCCRAC 1 cut(s) 582
MroI TCCGGA 1 cut(s) 272
MseI TTAA 3 cut(s) 761, 837, 971
MslI CAYNNNNRTG 2 cut(s) 642, 876
MspI CCGG 3 cut(s) 49, 79, 273
MspR9I CCNGG 3 cut(s) 50, 80, 154
MunI CAATTG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 148, 473
NciI CCSGG 2 cut(s) 50, 80
NdeII GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
NlaIII CATG 4 cut(s) 326, 697, 754, 802
NlaIV GGNNCC 2 cut(s) 271, 606
NsbI TGCGCA 1 cut(s) 288
PfeI GAWTC 2 cut(s) 235, 505
PkrI GCNGC 2 cut(s) 493, 829
PleI GAGTC 2 cut(s) 575, 676
PpsI GAGTC 2 cut(s) 575, 676
PshBI ATTAAT 2 cut(s) 761, 837
PsiI TTATAA 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 271, 606
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 2 cut(s) 334, 404
RsaNI GTAC 2 cut(s) 333, 403
RseI CAYNNNNRTG 2 cut(s) 642, 876
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 3 cut(s) 761, 837, 971
SatI GCNGC 2 cut(s) 492, 828
Sau3AI GATC 7 cut(s) 94, 156, 316, 362, 367, 667, 742
SchI GAGTC 2 cut(s) 575, 676
ScrFI CCNGG 3 cut(s) 50, 80, 154
SduI GDGCHC 3 cut(s) 153, 411, 435
SetI ASST 9 cut(s) 205, 254, 411, 455, 478, 610, 657, 715, 798
SfaNI GCATC 2 cut(s) 384, 868
SmiMI CAYNNNNRTG 2 cut(s) 642, 876
SmlI CTYRAG 2 cut(s) 782, 958
SmoI CTYRAG 2 cut(s) 782, 958
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 3 cut(s) 48, 78, 152
StyI CCWWGG 1 cut(s) 898
TaqI TCGA 1 cut(s) 349
TfiI GAWTC 2 cut(s) 235, 505
Tru1I TTAA 3 cut(s) 761, 837, 971
Tru9I TTAA 3 cut(s) 761, 837, 971
TseI GCWGC 2 cut(s) 491, 827
TspDTI ATGAA 8 cut(s) 245, 471, 554, 566, 747, 789, 852, 906
VspI ATTAAT 2 cut(s) 761, 837
XapI RAATTY 4 cut(s) 344, 523, 553, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.