FvH4_6g05740
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000418
Physical Location & Seq
Forward (+)
3269651 .. 3270657
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05740.t1

Sequence Viewer

Length: 843 bp
ATGGAACGTTTTCCGGTGGGATTCAGGTTTCATCCTACAGATAACGATCTCGTGAGTCACTACCTCCGCAACAAGGCCATGCTAGGAGACGGTTTCCGGTCCCCTTACGTCTCCGATTGCCCTGAATTCTACAGCTCGGAGCCTTGGACTGTGTGGGAAAAGTACGGTGGCAACTCAGTCGAGGACGGAGAGCCTCTCTTCTTCTTCATCAAACGCAAAAAGTTAAACCCTAAGGGCTCGCGCTTTGATCGGAAGGTGGGCACGGGAACCTGGAGCGGCCAGTATTTTGCCAAGGTTATGGAGGAGGGTAAGGTTATTGGAATCAAGAGGAACTTTCGATACGAGGGTGGAAGCTCTTCAGATCAAAACAATGCATGGTTGATGGATGAGTATGAGTTGAACAAGAATGATGTAACTGTCGTATGCGTTTTGAGAAAAAATCCTACAAAACCACCACCGAAAACTAACGAAACTAAGAGGAAGCTGAAAGATGGTGTTGATGGTATTGAACAAGATCTAGATCAAAGGAGAAAGCTTATTAGTAATCTGGATCAAAGGAGAAAGCTTCGAGGGAATTACATGCCGGAAAAGGAAGGGACTTCTTATCGGGAGGAACAAGGAGGCAGCAGTAGTAGTATTGATCATCATCAAGCTAGCAGTAGTTGGACGCCAAAGCAGGAGGATTATCGGCCTGAGTTGGCTCCGGATCTCGCCGCTGCTGATGATTTTGTGTTTTATACACATGATGAATTGCTTGCATCAACTTCGAAATCTAATGACTTTCTGGATCGATTTTATGAGGACAACAACTTCGACCAGTTGGTCCATAAGCAAGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

281

Amino Acids

32.46

Weight (kDa)

6.13

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 133 4.2e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 821
AccBSI CCGCTC 1 cut(s) 276
AccII CGCG 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 3 cut(s) 67, 276, 714
AclI AACGTT 1 cut(s) 7
AclWI GGATC 3 cut(s) 558, 714, 795
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 668
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 400, 509
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 6 cut(s) 135, 354, 484, 535, 565, 653
AluI AGCT 6 cut(s) 135, 354, 484, 535, 565, 653
Alw26I GTCTC 2 cut(s) 81, 115
AlwI GGATC 3 cut(s) 558, 714, 795
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 3 cut(s) 75, 277, 689
ApeKI GCWGC 2 cut(s) 624, 716
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
Asp700I GAANNNNTTC 2 cut(s) 9, 355
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 99, 823
AsuII TTCGAA 1 cut(s) 767
AsuNHI GCTAGC 1 cut(s) 653
AvaII GGWCC 2 cut(s) 99, 823
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BanII GRGCYC 1 cut(s) 239
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 2 cut(s) 636, 703
BccI CCATC 3 cut(s) 376, 485, 494
BcgI CGANNNNNNTGC 4 cut(s) 160, 194, 747, 781
BciT130I CCWGG 1 cut(s) 271
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 81, 115
BfaI CTAG 3 cut(s) 83, 518, 654
BfmI CTRYAG 2 cut(s) 36, 130
BglII AGATCT 1 cut(s) 514
BisI GCNGC 4 cut(s) 277, 625, 714, 717
BlsI GCNGC 4 cut(s) 278, 626, 715, 718
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 2 cut(s) 99, 823
BmgT120I GGNCC 2 cut(s) 99, 823
BmiI GGNNCC 4 cut(s) 101, 141, 268, 702
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 767
BmtI GCTAGC 1 cut(s) 657
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 292
Bpu14I TTCGAA 1 cut(s) 767
Bsa29I ATCGAT 1 cut(s) 790
BsaBI GATNNNNATC 3 cut(s) 45, 519, 645
BsaHI GRCGYC 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 143, 291
BsaWI WCCGGW 3 cut(s) 13, 96, 703
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 280, 817
Bse21I CCTNAGG 1 cut(s) 231
Bse8I GATNNNNATC 3 cut(s) 45, 519, 645
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 790
BseDI CCNNGG 2 cut(s) 143, 291
BseGI GGATG 2 cut(s) 31, 391
BseJI GATNNNNATC 3 cut(s) 45, 519, 645
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 189, 684
BseNI ACTGG 2 cut(s) 280, 817
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 636, 703
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 3 cut(s) 77, 279, 691
BshVI ATCGAT 1 cut(s) 790
BsiSI CCGG 4 cut(s) 14, 97, 584, 704
BslFI GGGAC 2 cut(s) 85, 610
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 81, 115
BsmBI CGTCTC 2 cut(s) 81, 115
BsmFI GGGAC 2 cut(s) 85, 610
BsnI GGCC 3 cut(s) 77, 279, 691
Bsp119I TTCGAA 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 239, 263
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
BspACI CCGC 3 cut(s) 67, 276, 714
BspANI GGCC 3 cut(s) 77, 279, 691
BspCNI CTCAG 2 cut(s) 188, 685
BspDI ATCGAT 1 cut(s) 790
BspEI TCCGGA 1 cut(s) 703
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 101, 141, 268, 702
BspOI GCTAGC 1 cut(s) 657
BspPI GGATC 3 cut(s) 558, 714, 795
BspQI GCTCTTC 1 cut(s) 361
BspT104I TTCGAA 1 cut(s) 767
BsrBI CCGCTC 1 cut(s) 276
BsrI ACTGG 2 cut(s) 280, 817
BssECI CCNNGG 2 cut(s) 143, 291
BssMI GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
BssNI GRCGYC 1 cut(s) 668
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 143, 291
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 4 cut(s) 92, 151, 167, 418
Bst6I CTCTTC 2 cut(s) 203, 361
BstACI GRCGYC 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 767
BstC8I GCNNGC 3 cut(s) 239, 655, 756
BstDEI CTNAG 4 cut(s) 175, 231, 474, 693
BstF5I GGATG 2 cut(s) 31, 391
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 9 cut(s) 49, 250, 364, 517, 523, 553, 643, 709, 790
BstMAI GTCTC 2 cut(s) 81, 115
BstMBI GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 2 cut(s) 36, 130
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 636, 703
BstX2I RGATCY 2 cut(s) 514, 706
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 514, 706
Bsu15I ATCGAT 1 cut(s) 790
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 3 cut(s) 77, 279, 691
BsuTUI ATCGAT 1 cut(s) 790
BtsCI GGATG 2 cut(s) 31, 391
Cac8I GCNNGC 3 cut(s) 239, 655, 756
CfoI GCGC 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 99, 823
ClaI ATCGAT 1 cut(s) 790
CseI GACGC 1 cut(s) 676
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 79, 375, 580, 743
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 4 cut(s) 175, 231, 474, 693
DpnI GATC 9 cut(s) 48, 249, 363, 516, 522, 552, 642, 708, 789
DpnII GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
DrdI GACNNNNNNGTC 1 cut(s) 821
DseDI GACNNNNNNGTC 1 cut(s) 821
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 203, 361
EarI CTCTTC 2 cut(s) 203, 361
Eco130I CCWWGG 2 cut(s) 143, 291
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 99, 823
Eco57I CTGAAG 1 cut(s) 342
Eco81I CCTNAGG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 143, 291
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 2 cut(s) 143, 291
Esp3I CGTCTC 2 cut(s) 81, 115
FaeI CATG 4 cut(s) 82, 378, 583, 746
FalI AAGNNNNNCTT 3 cut(s) 317, 349, 821
FaqI GGGAC 2 cut(s) 85, 610
FatI CATG 4 cut(s) 78, 374, 579, 742
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 4 cut(s) 277, 625, 714, 717
FokI GGATG 2 cut(s) 18, 398
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 4 cut(s) 277, 625, 714, 717
FspBI CTAG 3 cut(s) 83, 518, 654
GlaI GCGC 1 cut(s) 242
GluI GCNGC 4 cut(s) 277, 625, 714, 717
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 3 cut(s) 77, 279, 691
HapII CCGG 4 cut(s) 14, 97, 584, 704
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 668
Hin1II CATG 4 cut(s) 82, 378, 583, 746
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 533, 563
HinfI GANTC 3 cut(s) 21, 55, 321
HpaII CCGG 4 cut(s) 14, 97, 584, 704
Hpy188I TCNGA 4 cut(s) 115, 139, 252, 361
Hpy188III TCNNGA 7 cut(s) 52, 325, 518, 548, 608, 704, 785
HpyAV CCTTC 2 cut(s) 247, 587
HpyCH4III ACNGT 4 cut(s) 92, 151, 167, 418
HpyCH4IV ACGT 2 cut(s) 7, 108
HpyCH4V TGCA 2 cut(s) 374, 758
HpyF3I CTNAG 4 cut(s) 175, 231, 474, 693
HpySE526I ACGT 2 cut(s) 7, 108
Hsp92I GRCGYC 1 cut(s) 668
Hsp92II CATG 4 cut(s) 82, 378, 583, 746
HspAI GCGC 1 cut(s) 241
Kpn2I TCCGGA 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 3 cut(s) 139, 273, 706
Lsp1109I GCAGC 2 cut(s) 636, 703
LweI GCATC 1 cut(s) 767
MaeI CTAG 3 cut(s) 83, 518, 654
MaeII ACGT 2 cut(s) 7, 108
MaeIII GTNAC 2 cut(s) 56, 412
MalI GATC 9 cut(s) 48, 249, 363, 516, 522, 552, 642, 708, 789
MbiI CCGCTC 1 cut(s) 276
MboI GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
MboII GAAGA 4 cut(s) 190, 193, 196, 348
MflI RGATCY 2 cut(s) 514, 706
MhlI GDGCHC 2 cut(s) 239, 263
MluCI AATT 3 cut(s) 125, 574, 749
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 644
Mph1103I ATGCAT 1 cut(s) 376
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 2 cut(s) 9, 355
MseI TTAA 2 cut(s) 224, 841
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 4 cut(s) 14, 97, 584, 704
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 241
NdeII GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 4 cut(s) 82, 378, 583, 746
NlaIV GGNNCC 4 cut(s) 101, 141, 268, 702
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 583
NspV TTCGAA 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 361
PdmI GAANNNNTTC 2 cut(s) 9, 355
PfeI GAWTC 2 cut(s) 21, 321
PkrI GCNGC 4 cut(s) 278, 626, 715, 718
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 4 cut(s) 101, 141, 268, 702
PspPI GGNCC 2 cut(s) 99, 823
PsrI GAACNNNNNNTAC 2 cut(s) 323, 355
PsuI RGATCY 2 cut(s) 514, 706
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 224, 841
SatI GCNGC 4 cut(s) 277, 625, 714, 717
Sau3AI GATC 9 cut(s) 46, 247, 361, 514, 520, 550, 640, 706, 787
Sau96I GGNCC 2 cut(s) 99, 823
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 2 cut(s) 239, 263
SfaNI GCATC 1 cut(s) 767
SfcI CTRYAG 2 cut(s) 36, 130
SfuI TTCGAA 1 cut(s) 767
SinI GGWCC 2 cut(s) 99, 823
Sse9I AATT 3 cut(s) 125, 574, 749
SsiI CCGC 3 cut(s) 67, 276, 714
SspMI CTAG 3 cut(s) 83, 518, 654
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 2 cut(s) 143, 291
TaaI ACNGT 4 cut(s) 92, 151, 167, 418
TaiI ACGT 2 cut(s) 10, 111
TaqI TCGA 6 cut(s) 180, 337, 568, 767, 790, 813
TasI AATT 3 cut(s) 125, 574, 749
TauI GCSGC 2 cut(s) 279, 716
TfiI GAWTC 2 cut(s) 21, 321
Tru1I TTAA 2 cut(s) 224, 841
Tru9I TTAA 2 cut(s) 224, 841
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 624, 716
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 20, 196, 762
TspGWI ACGGA 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 99, 823
XapI RAATTY 1 cut(s) 125
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 1 cut(s) 583
XmnI GAANNNNTTC 2 cut(s) 9, 355
XspI CTAG 3 cut(s) 83, 518, 654
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.