Rmu_sc0020815.1_g000004
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020815.1
OG0000418
Physical Location & Seq
Reverse (-)
12197 .. 12676
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020815.1_g000004.1.cds

Sequence Viewer

Length: 480 bp
atggcatcgggtgctttcctagttggttatagatttcatcctacagacctggaattggtggcttactacctccacaaccgggttgccatggttgatcagtttcactcgagtttaatctttgattttcctgatttctatggccaaaatgagccttggctcattggggacatgtttcgtgcccaatccaacagtactatgaaggaggaggaggaagaacctctatgtttctttactcaccacaagaaattcaatcccaaagtgaaaaaatttgataggaaagtgggatcgggaacatggagtgccgagtattcaaaaaatgttgttgttgcagatgatgatagttatattggaatcaagagagaattttggtatgagggtggatctgatccacatcaaaatagggcttggttgatgcagaagtaccagatcacatctcacagtaatgatctcgtactctgcaccctcagaaaaaatccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

159

Amino Acids

18.61

Weight (kDa)

6.15

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 292, 380, 388
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 3 cut(s) 245, 266, 362
AfaI GTAC 3 cut(s) 193, 422, 453
AfiI CCNNNNNNNGG 2 cut(s) 55, 79
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 250, 312
AjnI CCWGG 1 cut(s) 48
AlwI GGATC 3 cut(s) 292, 380, 388
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 3 cut(s) 245, 266, 362
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 50, 80
BmeT110I CYCGRG 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 50, 80
BmsI GCATC 2 cut(s) 14, 402
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 87, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 79
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 87, 152
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 55, 79
BseMII CTCAG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 218, 221
BseSI GKGCMC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 442
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 55, 79
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 6 cut(s) 94, 284, 380, 385, 426, 445
Bsp19I CCATGG 1 cut(s) 87
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 477
BspPI GGATC 3 cut(s) 292, 380, 388
BssECI CCNNGG 2 cut(s) 87, 152
BssMI GATC 6 cut(s) 94, 284, 380, 385, 426, 445
BssT1I CCWWGG 2 cut(s) 87, 152
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 191, 440
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 464
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 6 cut(s) 97, 287, 383, 388, 429, 448
BstMBI GATC 6 cut(s) 94, 284, 380, 385, 426, 445
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 48, 78
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 37
Csp6I GTAC 3 cut(s) 192, 421, 452
CviAII CATG 3 cut(s) 88, 169, 294
CviJI RGCY 5 cut(s) 62, 141, 151, 157, 404
CviKI_1 RGCY 5 cut(s) 62, 141, 151, 157, 404
CviQI GTAC 3 cut(s) 192, 421, 452
DdeI CTNAG 1 cut(s) 464
DpnI GATC 6 cut(s) 96, 286, 382, 387, 428, 447
DpnII GATC 6 cut(s) 94, 284, 380, 385, 426, 445
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 87, 152
Eco88I CYCGRG 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 87, 152
ErhI CCWWGG 2 cut(s) 87, 152
FaeI CATG 3 cut(s) 91, 172, 297
FaiI YATR 9 cut(s) 30, 89, 138, 170, 197, 223, 295, 345, 372
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 87, 168, 293
FbaI TGATCA 1 cut(s) 94
FokI GGATG 1 cut(s) 24
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 79
Hin1II CATG 3 cut(s) 91, 172, 297
HinfI GANTC 1 cut(s) 351
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 385, 467
Hpy188III TCNNGA 3 cut(s) 128, 288, 355
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 191, 440
HpyCH4V TGCA 3 cut(s) 329, 415, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 464
Hsp92II CATG 3 cut(s) 91, 172, 297
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 6 cut(s) 94, 284, 380, 385, 426, 445
LpnPI CCDG 5 cut(s) 35, 62, 92, 141, 437
LweI GCATC 2 cut(s) 14, 402
MaeI CTAG 1 cut(s) 20
MalI GATC 6 cut(s) 96, 286, 382, 387, 428, 447
MboI GATC 6 cut(s) 94, 284, 380, 385, 426, 445
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 4 cut(s) 53, 245, 266, 362
MluNI TGGCCA 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 80, 196, 199, 202, 228, 367, 473
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 441
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 50, 80
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 87
NdeII GATC 6 cut(s) 94, 284, 380, 385, 426, 445
NlaIII CATG 3 cut(s) 91, 172, 297
NmeAIII GCCGAG 1 cut(s) 328
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 106
PciI ACATGT 1 cut(s) 168
PfeI GAWTC 1 cut(s) 351
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 106
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 3 cut(s) 193, 422, 453
RsaNI GTAC 3 cut(s) 192, 421, 452
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 6 cut(s) 94, 284, 380, 385, 426, 445
ScaI AGTACT 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 50, 80
SduI GDGCHC 1 cut(s) 181
SetI ASST 3 cut(s) 51, 72, 220
SfaNI GCATC 2 cut(s) 14, 402
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 4 cut(s) 53, 245, 266, 362
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 48, 78
StyI CCWWGG 2 cut(s) 87, 152
TaaI ACNGT 2 cut(s) 191, 440
TaqI TCGA 1 cut(s) 107
TasI AATT 4 cut(s) 53, 245, 266, 362
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 26, 212
XapI RAATTY 3 cut(s) 245, 266, 362
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.