RchiOBHm_Chr3g0454621
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000418
Physical Location & Seq
Forward (+)
4670316 .. 4671332
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42162

Sequence Viewer

Length: 1017 bp
ATGAATATGGCGCCAACAATGCAAAGGTATCCGAAGGGCATGAGGTTTCATCCTACAGACTTGGAACTCGTTGATTATTTCCTTCACAACAAGGCCGATGCCGATGAGAAGGGTTGTTACTCCAGCTTAATCTATGAATGTAACGATTTTTATGGTGAAAAAGAGCCGTGGGTTATTTGGGACATGTATGGGGGTTCTACATATGAGGAAGGAGAACCCCTCTACTTCTACACCAAGCGCATCAAACAGAATAGTAATGGCAAACGCTTTGCTCGGAAGGTAGGCTCCGGTACATGGAGTGGAGAGTACTCGAAAGAGGTTCTTGCTGCCGATGACGGTAAAACCAAAATTGGGACAATGAGGAACTTTCGCTACGAGAAGGGATGTGATTCTGGTCAAAACGGTGCATGGCTCATGCACGAGTACGAGAGTGAGTTCGATAAGAACGGGGAAGATGATTATGTAATTTGCGTTTTGAGAAAAAATCCAAGAAAAGCTCCAGCACTACTACAACCTGATCAGAGAGATATTGAAAGTACAAAGAAGAGTAGTGTCAATGACAAAAAGAGAAAGAGGATGAAGTCGGACGACGTTGTTGATCATCAAGATCATCAACAGAGAAAGCTGGAAAAGCAACAAAAGGATGATCGTGAACTGATAAAGATCGAAGAGGAAGAAAGAAAGGAAGAGAGTTACGACGAACAAGGCCGTAGCAGTTGTACGCAGCTGCCCTATCATCATGATCAAGATAATAATATTGATTATCCTGATAATCATAATTTTTATTTGGATTATTATTTTCCAGAGCTCTTTGGCAATAATTACGATGATGGTGTCACTATAGACGAACTCATTGGACCAATTTCAGATGATTCTGTATACTACAAGTCCATCCCATTTCAGGATCAGTTATATCACGGCGACGATGACAGCTTCAACTTCGTAGATTACTCGGATGGAGGGGTGTCACAGCTGCCTAACGATCAACACACTGTTGATTACCTGGGGAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

338

Amino Acids

39.61

Weight (kDa)

4.79

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 143 2.2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 879
AclWI GGATC 1 cut(s) 912
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 5 cut(s) 292, 308, 425, 538, 721
AfiI CCNNNNNNNGG 3 cut(s) 294, 351, 901
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 2 cut(s) 533, 937
AjnI CCWGG 1 cut(s) 1002
AluBI AGCT 7 cut(s) 126, 497, 625, 727, 808, 933, 973
AluI AGCT 7 cut(s) 126, 497, 625, 727, 808, 933, 973
Alw21I GWGCWC 1 cut(s) 810
AlwI GGATC 1 cut(s) 912
AoxI GGCC 2 cut(s) 93, 706
ApeKI GCWGC 4 cut(s) 326, 724, 727, 973
AspLEI GCGC 2 cut(s) 13, 240
AspS9I GGNCC 1 cut(s) 857
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 857
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 810
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 4 cut(s) 313, 714, 736, 960
BccI CCATC 3 cut(s) 824, 899, 950
BceAI ACGGC 3 cut(s) 151, 693, 934
BciT130I CCWGG 1 cut(s) 1004
BciVI GTATCC 1 cut(s) 39
BclI TGATCA 3 cut(s) 517, 598, 742
BfmI CTRYAG 2 cut(s) 54, 840
BfoI RGCGCY 1 cut(s) 14
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 4 cut(s) 327, 725, 728, 974
BlsI GCNGC 4 cut(s) 328, 726, 729, 975
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 1004
Bme18I GGWCC 1 cut(s) 857
BmgT120I GGNCC 1 cut(s) 857
BmiI GGNNCC 2 cut(s) 12, 286
BmrFI CCNGG 1 cut(s) 1004
BmsI GCATC 2 cut(s) 88, 249
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 2 cut(s) 106, 483
BsaBI GATNNNNATC 1 cut(s) 662
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 167, 1003
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 351, 901
Bse8I GATNNNNATC 1 cut(s) 662
BseBI CCWGG 1 cut(s) 1004
BseDI CCNNGG 2 cut(s) 167, 1003
BseGI GGATG 6 cut(s) 49, 389, 582, 649, 891, 961
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 3 cut(s) 294, 351, 901
BseXI GCAGC 4 cut(s) 313, 714, 736, 960
BshFI GGCC 2 cut(s) 95, 708
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 810
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 194, 367
BslI CCNNNNNNNGG 3 cut(s) 294, 351, 901
BsmFI GGGAC 2 cut(s) 194, 367
BsnI GGCC 2 cut(s) 95, 708
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
BspANI GGCC 2 cut(s) 95, 708
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 12, 286
BspPI GGATC 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 167, 1003
BssMI GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
BssNAI GTATAC 1 cut(s) 880
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 419
Bst1107I GTATAC 1 cut(s) 880
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 1004
Bst4CI ACNGT 3 cut(s) 338, 404, 994
Bst6I CTCTTC 3 cut(s) 539, 663, 681
BstACI GRCGYC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 6 cut(s) 49, 389, 582, 649, 891, 961
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 240
BstKTI GATC 8 cut(s) 520, 601, 610, 649, 666, 745, 907, 985
BstMBI GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
BstMWI GCNNNNNNNGC 2 cut(s) 19, 631
BstNI CCWGG 1 cut(s) 1004
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 1002
BstSFI CTRYAG 2 cut(s) 54, 840
BstV1I GCAGC 4 cut(s) 313, 714, 736, 960
BstZ17I GTATAC 1 cut(s) 880
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 95, 708
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 6 cut(s) 49, 389, 582, 649, 891, 961
BtsIMutI CAGTG 1 cut(s) 990
CciI TCATGA 1 cut(s) 739
CfoI GCGC 2 cut(s) 13, 240
Cfr13I GGNCC 1 cut(s) 857
Csp6I GTAC 5 cut(s) 291, 307, 424, 537, 720
CviAII CATG 6 cut(s) 40, 184, 294, 408, 415, 740
CviQI GTAC 5 cut(s) 291, 307, 424, 537, 720
DinI GGCGCC 1 cut(s) 12
DpnI GATC 8 cut(s) 519, 600, 609, 648, 665, 744, 906, 984
DpnII GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
Eam1104I CTCTTC 3 cut(s) 539, 663, 681
EarI CTCTTC 3 cut(s) 539, 663, 681
Ecl136II GAGCTC 1 cut(s) 808
Eco24I GRGCYC 1 cut(s) 810
Eco47I GGWCC 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 808
EcoICRI GAGCTC 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 1002
EcoT38I GRGCYC 1 cut(s) 810
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaeI CATG 6 cut(s) 43, 187, 297, 411, 418, 743
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 2 cut(s) 194, 367
FatI CATG 6 cut(s) 39, 183, 293, 407, 414, 739
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 3 cut(s) 517, 598, 742
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 4 cut(s) 327, 725, 728, 974
FokI GGATG 6 cut(s) 36, 396, 589, 656, 878, 968
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 4 cut(s) 327, 725, 728, 974
GlaI GCGC 2 cut(s) 12, 239
GluI GCNGC 4 cut(s) 327, 725, 728, 974
GsuI CTGGAG 2 cut(s) 106, 483
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 95, 708
HapII CCGG 1 cut(s) 288
HhaI GCGC 2 cut(s) 13, 240
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 6 cut(s) 43, 187, 297, 411, 418, 743
Hin6I GCGC 2 cut(s) 11, 238
HinP1I GCGC 2 cut(s) 11, 238
HinfI GANTC 2 cut(s) 389, 872
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 653, 880
Hpy188I TCNGA 6 cut(s) 33, 276, 522, 586, 868, 955
Hpy188III TCNNGA 7 cut(s) 605, 650, 740, 746, 767, 803, 902
Hpy8I GTNNAC 2 cut(s) 653, 880
Hpy99I CGWCG 3 cut(s) 593, 701, 926
HpyAV CCTTC 6 cut(s) 28, 92, 103, 203, 271, 373
HpyCH4III ACNGT 3 cut(s) 338, 404, 994
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 3 cut(s) 22, 407, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 631
HpySE526I ACGT 1 cut(s) 591
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 6 cut(s) 43, 187, 297, 411, 418, 743
HspAI GCGC 2 cut(s) 11, 238
KasI GGCGCC 1 cut(s) 10
Ksp22I TGATCA 3 cut(s) 517, 598, 742
Kzo9I GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
LmnI GCTCC 2 cut(s) 290, 502
Lsp1109I GCAGC 4 cut(s) 313, 714, 736, 960
LweI GCATC 2 cut(s) 88, 249
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 5 cut(s) 116, 140, 692, 835, 966
MalI GATC 8 cut(s) 519, 600, 609, 648, 665, 744, 906, 984
MboI GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
MboII GAAGA 5 cut(s) 464, 556, 680, 686, 698
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 5 cut(s) 348, 465, 778, 820, 861
Mly113I GGCGCC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 8 cut(s) 36, 199, 230, 310, 354, 567, 664, 953
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 727, 973
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 1004
MvaI CCWGG 1 cut(s) 1004
MwoI GCNNNNNNNGC 2 cut(s) 19, 631
NarI GGCGCC 1 cut(s) 11
NdeI CATATG 1 cut(s) 202
NdeII GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
NlaIII CATG 6 cut(s) 43, 187, 297, 411, 418, 743
NlaIV GGNNCC 2 cut(s) 12, 286
NmuCI GTSAC 2 cut(s) 835, 966
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 739
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 2 cut(s) 389, 872
PkrI GCNGC 4 cut(s) 328, 726, 729, 975
PluTI GGCGCC 1 cut(s) 14
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 1002
PspGI CCWGG 1 cut(s) 1002
PspN4I GGNNCC 2 cut(s) 12, 286
PspPI GGNCC 1 cut(s) 857
PsrI GAACNNNNNNTAC 2 cut(s) 356, 388
PvuII CAGCTG 2 cut(s) 727, 973
RsaI GTAC 5 cut(s) 292, 308, 425, 538, 721
RsaNI GTAC 5 cut(s) 291, 307, 424, 537, 720
SacI GAGCTC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 4 cut(s) 327, 725, 728, 974
Sau3AI GATC 8 cut(s) 517, 598, 607, 646, 663, 742, 904, 982
Sau96I GGNCC 1 cut(s) 857
ScaI AGTACT 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 1004
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 2 cut(s) 88, 249
SfcI CTRYAG 2 cut(s) 54, 840
SfoI GGCGCC 1 cut(s) 12
SinI GGWCC 1 cut(s) 857
Sse9I AATT 5 cut(s) 348, 465, 778, 820, 861
SspDI GGCGCC 1 cut(s) 10
SspI AATATT 1 cut(s) 757
SstI GAGCTC 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 1002
TaaI ACNGT 3 cut(s) 338, 404, 994
TaiI ACGT 1 cut(s) 594
TaqI TCGA 3 cut(s) 311, 438, 666
TasI AATT 5 cut(s) 348, 465, 778, 820, 861
TatI WGTACW 2 cut(s) 306, 536
TfiI GAWTC 2 cut(s) 389, 872
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 2 cut(s) 835, 966
TseI GCWGC 4 cut(s) 326, 724, 727, 973
Tsp45I GTSAC 2 cut(s) 835, 966
TspDTI ATGAA 4 cut(s) 17, 38, 150, 593
TspRI CASTG 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 857
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 879
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.