Rorug07G0143000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000418
Physical Location & Seq
Reverse (-)
11272229 .. 11274002
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0143000.1

Sequence Viewer

Length: 1440 bp
ATGGAAGCCAAGTCCTCCACCCACCAGAAACTGAAACTACCACACGTCGTCATTGTGCCAACTCCGGGACTAGGCCACCTGATCCCCCTCGTCGAGCTGGCCCAACGACTCGTCATCCACCACAACTTCACCGTCACCTTCTTCATCCCCAACGACGGGTCGCAGCTGCTACCCCAAAAGAAAGTCCTGGAAACCTTGCCTCAAGCCATATCCTACGCCTTCCTCCCTCAAGTAAACTTGGACGACCTCCCTCATGACGTCGCATCCGAGACGAAGATCGTACTCACCTTGACTCGTTCACTGTCTGCCCTGCGTGACTCGGTTAAGCTCCTCGTCGAGTCAACTCGGGTCGTAGCTCTAGTGGTGGATATTTTCGGCTGGGAAGCCTTTGATGTGGCCAACGAGTTTAACGTACTCTTTTACTATTTCTTCAGTACGAACGCTATGGGGTTGTGGTTTTTGTTCGAGCTGCCAAAGCTCGATGAAACCACTTCATGCGAGTATAGGGATCTGCCTGAACCGGTCCACCTTCCGGGTTGTGTGCCACTCCACGGTTCAGATTTTGTACAGCAGGTTCAAGAAAGGTCTAATGAGGCCTATAGAGCGACGGTGAAAATGAGCAAGTGGTATAGATCGGCAGCTGGGATCATAGTGAATAGCTTTGCGGATTTGGAACCCGGTGCTTTGGAGGCTTACAAGGAGCAACGACAAGTTCTTGGTCTTCCACCGCTTTACCCGGTCGGACCGGTGGTAAAGACAGGAATGGCAGATGTGTTAGGTGAGAACGAGTGCTTGAGCTGGTTAAACAGTCAACCAGAAGGGTCAGTGCTGTTTGTTTCATTTGGGAGCGGTGGGACCCTCTCAAGCGAGCAGATGAATGAGTTGGCAATGGGGCTTGAAATGAGTGGGGTGAGATTTCTATGGGTGGTTAGGAGTCCGAATGAGACATCTACAAGTGCCACTTACTTTGGTGATCAAGGTTCCAACGACCCTTCGAGTTTTCTTCCTCGAGGATTTTTGGAGAGGACCAAAGAGTTGGGGTTAGTAGTACCCTCTTGGGCTCCTCAGGTCCAAATTTTGAGTCACCGGTCGACAGGTGGGTTTCTGACCCATTGCGGGTGGAACTCGATCCTCGAAAGCGTTGTGCATGGCGTGTCTTTGATTGCTTGGCCACTCTACGCAGAGCAGAAGATGAATGCAGTTTTGCTTTCTGAAGATATACAAGTGGCATGGAGGGTCAAGATGAATGATAGGGGCATAGTGGAGAGTCGTGATATTGAGAAATATGCAAGGGATCTGATTGAAGGAGATGAAGGGAAATTGCTCAAGAAAAAGATGATGGAGCTAAAAGAGGCAGCCAAAGTTGCTCTGAGCCAATATGGGTCGTCTACAAAATCACTTGCAGACGTAGCCGAGATCTGGAACGGCCACAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

479

Amino Acids

53.22

Weight (kDa)

5.46

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 264 - 449 1.1e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AbsI CCTCGAGG 1 cut(s) 1008
Acc36I ACCTGC 1 cut(s) 562
AccBSI CCGCTC 1 cut(s) 849
AccI GTMKAC 2 cut(s) 1091, 1388
AciI CCGC 4 cut(s) 665, 728, 849, 1116
AclWI GGATC 5 cut(s) 76, 516, 653, 1123, 1302
AcoI YGGCCR 3 cut(s) 396, 1169, 1426
AcsI RAATTY 1 cut(s) 1074
AcuI CTGAAG 2 cut(s) 415, 1233
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 5 cut(s) 282, 414, 436, 567, 1050
AfiI CCNNNNNNNGG 8 cut(s) 65, 71, 155, 156, 532, 551, 1116, 1419
AflIII ACRYGT 1 cut(s) 43
AgeI ACCGGT 3 cut(s) 520, 745, 1086
AgsI TTSAA 3 cut(s) 578, 899, 1304
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 263, 938
AlwI GGATC 5 cut(s) 76, 516, 653, 1123, 1302
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 2 cut(s) 345, 1008
AoxI GGCC 6 cut(s) 73, 99, 396, 594, 1169, 1426
ApeKI GCWGC 5 cut(s) 163, 166, 469, 638, 1355
ApoI RAATTY 1 cut(s) 1074
ArsI GACNNNNNNTTYG 2 cut(s) 1066, 1098
AsiGI ACCGGT 3 cut(s) 520, 745, 1086
AspS9I GGNCC 6 cut(s) 100, 523, 743, 855, 1026, 1069
AsuC2I CCSGG 4 cut(s) 66, 534, 678, 737
AsuHPI GGTGA 8 cut(s) 121, 127, 277, 622, 791, 922, 983, 1076
AvaI CYCGRG 2 cut(s) 345, 1008
AvaII GGWCC 5 cut(s) 523, 743, 855, 1026, 1069
AxyI CCTNAGG 1 cut(s) 1065
BalI TGGCCA 2 cut(s) 398, 1171
BanII GRGCYC 1 cut(s) 1063
BbsI GAAGAC 1 cut(s) 713
BbvI GCAGC 5 cut(s) 153, 175, 456, 650, 1367
BccI CCATC 1 cut(s) 1333
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 4 cut(s) 66, 534, 678, 737
BcoDI GTCTC 2 cut(s) 263, 938
BfaI CTAG 2 cut(s) 71, 359
BfmI CTRYAG 1 cut(s) 598
BfuAI ACCTGC 1 cut(s) 562
BglII AGATCT 1 cut(s) 1416
BisI GCNGC 5 cut(s) 164, 167, 470, 639, 1356
BlsI GCNGC 5 cut(s) 165, 168, 471, 640, 1357
Bme1390I CCNGG 5 cut(s) 66, 188, 534, 678, 737
Bme18I GGWCC 5 cut(s) 523, 743, 855, 1026, 1069
BmeT110I CYCGRG 2 cut(s) 345, 1008
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 6 cut(s) 100, 523, 743, 855, 1026, 1069
BmiI GGNNCC 5 cut(s) 675, 856, 857, 982, 1062
BmrFI CCNGG 5 cut(s) 66, 188, 534, 678, 737
BmsI GCATC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 713
BpuEI CTTGAG 5 cut(s) 186, 213, 814, 847, 1310
BpuMI CCSGG 4 cut(s) 66, 534, 678, 737
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 550
BsaWI WCCGGW 3 cut(s) 520, 745, 1086
Bsc4I CCNNNNNNNGG 8 cut(s) 65, 71, 155, 156, 532, 551, 1116, 1419
Bse118I RCCGGY 3 cut(s) 520, 745, 1086
Bse21I CCTNAGG 1 cut(s) 1065
Bse3DI GCAATG 2 cut(s) 894, 1111
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 550
BseGI GGATG 3 cut(s) 114, 144, 263
BseLI CCNNNNNNNGG 8 cut(s) 65, 71, 155, 156, 532, 551, 1116, 1419
BseMI GCAATG 2 cut(s) 894, 1111
BseMII CTCAG 2 cut(s) 1079, 1361
BseRI GAGGAG 2 cut(s) 320, 1053
BseXI GCAGC 5 cut(s) 153, 175, 456, 650, 1367
BseYI CCCAGC 2 cut(s) 378, 641
Bsh1285I CGRYCG 2 cut(s) 741, 1091
BshFI GGCC 6 cut(s) 75, 101, 398, 596, 1171, 1428
BshTI ACCGGT 3 cut(s) 520, 745, 1086
BsiEI CGRYCG 2 cut(s) 741, 1091
BsiHKCI CYCGRG 2 cut(s) 345, 1008
BsiSI CCGG 7 cut(s) 65, 521, 533, 678, 737, 746, 1087
BslFI GGGAC 2 cut(s) 81, 868
BslI CCNNNNNNNGG 8 cut(s) 65, 71, 155, 156, 532, 551, 1116, 1419
BsmAI GTCTC 2 cut(s) 263, 938
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 2 cut(s) 81, 868
BsmI GAATGC 1 cut(s) 1201
BsnI GGCC 6 cut(s) 75, 101, 398, 596, 1171, 1428
BsoBI CYCGRG 2 cut(s) 345, 1008
Bsp1286I GDGCHC 1 cut(s) 1063
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
BspACI CCGC 4 cut(s) 665, 728, 849, 1116
BspANI GGCC 6 cut(s) 75, 101, 398, 596, 1171, 1428
BspCNI CTCAG 2 cut(s) 1078, 1362
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 5 cut(s) 675, 856, 857, 982, 1062
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 5 cut(s) 76, 516, 653, 1123, 1302
BsrBI CCGCTC 1 cut(s) 849
BsrDI GCAATG 2 cut(s) 894, 1111
BsrFI RCCGGY 3 cut(s) 520, 745, 1086
BsrGI TGTACA 1 cut(s) 565
BssAI RCCGGY 3 cut(s) 520, 745, 1086
BssECI CCNNGG 1 cut(s) 550
BssMI GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 5 cut(s) 133, 303, 554, 610, 809
BstACI GRCGYC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 99, 869
BstDEI CTNAG 2 cut(s) 1065, 1370
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 3 cut(s) 114, 144, 263
BstKTI GATC 9 cut(s) 84, 279, 511, 635, 648, 976, 1131, 1297, 1419
BstMAI GTCTC 2 cut(s) 263, 938
BstMBI GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
BstMCI CGRYCG 2 cut(s) 741, 1091
BstMWI GCNNNNNNNGC 5 cut(s) 475, 602, 689, 1364, 1409
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 5 cut(s) 64, 186, 532, 676, 735
BstSFI CTRYAG 1 cut(s) 598
BstV1I GCAGC 5 cut(s) 153, 175, 456, 650, 1367
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 3 cut(s) 508, 1294, 1416
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 3 cut(s) 508, 1294, 1416
Bsu36I CCTNAGG 1 cut(s) 1065
BsuRI GGCC 6 cut(s) 75, 101, 398, 596, 1171, 1428
BtgI CCRYGG 1 cut(s) 550
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 114, 144, 263
BtsIMutI CAGTG 2 cut(s) 299, 831
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 2 cut(s) 99, 869
CaiI CAGNNNCTG 1 cut(s) 31
CciI TCATGA 1 cut(s) 253
Cfr10I RCCGGY 3 cut(s) 520, 745, 1086
Cfr13I GGNCC 6 cut(s) 100, 523, 743, 855, 1026, 1069
CpoI CGGWCCG 1 cut(s) 743
Csp6I GTAC 5 cut(s) 281, 413, 435, 566, 1049
CspAI ACCGGT 3 cut(s) 520, 745, 1086
CspCI CAANNNNNGTGG 2 cut(s) 949, 984
CspI CGGWCCG 1 cut(s) 743
CviAII CATG 4 cut(s) 254, 495, 1148, 1230
CviQI GTAC 5 cut(s) 281, 413, 435, 566, 1049
DdeI CTNAG 2 cut(s) 1065, 1370
DpnI GATC 9 cut(s) 83, 278, 510, 634, 647, 975, 1130, 1296, 1418
DpnII GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
EaeI YGGCCR 3 cut(s) 396, 1169, 1426
Eco147I AGGCCT 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 1063
Eco47I GGWCC 5 cut(s) 523, 743, 855, 1026, 1069
Eco57I CTGAAG 2 cut(s) 415, 1233
Eco81I CCTNAGG 1 cut(s) 1065
Eco88I CYCGRG 2 cut(s) 345, 1008
EcoO109I RGGNCCY 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 1063
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 4 cut(s) 257, 498, 1151, 1233
FalI AAGNNNNNCTT 2 cut(s) 946, 978
FaqI GGGAC 2 cut(s) 81, 868
FatI CATG 4 cut(s) 253, 494, 1147, 1229
FauI CCCGC 1 cut(s) 1109
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 2 cut(s) 1091, 1388
Fnu4HI GCNGC 5 cut(s) 164, 167, 470, 639, 1356
FokI GGATG 3 cut(s) 101, 131, 250
FriOI GRGCYC 1 cut(s) 1063
Fsp4HI GCNGC 5 cut(s) 164, 167, 470, 639, 1356
FspBI CTAG 2 cut(s) 71, 359
GluI GCNGC 5 cut(s) 164, 167, 470, 639, 1356
GsaI CCCAGC 2 cut(s) 382, 645
HaeIII GGCC 6 cut(s) 75, 101, 398, 596, 1171, 1428
HapII CCGG 7 cut(s) 65, 521, 533, 678, 737, 746, 1087
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 4 cut(s) 257, 498, 1151, 1233
HincII GTYRAC 3 cut(s) 342, 812, 1092
HindII GTYRAC 3 cut(s) 342, 812, 1092
HinfI GANTC 7 cut(s) 108, 292, 317, 338, 934, 1081, 1267
HpaII CCGG 7 cut(s) 65, 521, 533, 678, 737, 746, 1087
HphI GGTGA 8 cut(s) 121, 127, 277, 622, 791, 922, 983, 1076
Hpy166II GTNNAC 7 cut(s) 235, 299, 342, 526, 812, 1092, 1389
Hpy188I TCNGA 8 cut(s) 268, 559, 743, 939, 1107, 1213, 1299, 1371
Hpy188III TCNNGA 6 cut(s) 254, 578, 1240, 1271, 1327, 1420
Hpy8I GTNNAC 7 cut(s) 235, 299, 342, 526, 812, 1092, 1389
Hpy99I CGWCG 6 cut(s) 50, 95, 158, 263, 338, 610
HpyAV CCTTC 7 cut(s) 148, 229, 539, 812, 1002, 1298, 1307
HpyCH4III ACNGT 5 cut(s) 133, 303, 554, 610, 809
HpyCH4IV ACGT 4 cut(s) 45, 258, 411, 1407
HpyCH4V TGCA 4 cut(s) 1147, 1199, 1289, 1403
HpyF10VI GCNNNNNNNGC 5 cut(s) 475, 602, 689, 1364, 1409
HpyF3I CTNAG 2 cut(s) 1065, 1370
HpySE526I ACGT 4 cut(s) 45, 258, 411, 1407
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 4 cut(s) 257, 498, 1151, 1233
KflI GGGWCCC 1 cut(s) 855
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
LmnI GCTCC 5 cut(s) 333, 700, 846, 1066, 1342
Lsp1109I GCAGC 5 cut(s) 153, 175, 456, 650, 1367
LweI GCATC 1 cut(s) 272
MaeI CTAG 2 cut(s) 71, 359
MaeII ACGT 4 cut(s) 45, 258, 411, 1407
MaeIII GTNAC 3 cut(s) 133, 314, 1082
MalI GATC 9 cut(s) 83, 278, 510, 634, 647, 975, 1130, 1296, 1418
MbiI CCGCTC 1 cut(s) 849
MboI GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
MboII GAAGA 7 cut(s) 133, 286, 421, 713, 995, 1201, 1226
MflI RGATCY 3 cut(s) 508, 1294, 1416
MhlI GDGCHC 1 cut(s) 1063
MlsI TGGCCA 2 cut(s) 398, 1171
MluCI AATT 3 cut(s) 1074, 1319, 1435
MluNI TGGCCA 2 cut(s) 398, 1171
MlyI GAGTC 7 cut(s) 102, 286, 311, 347, 943, 1090, 1276
MmeI TCCRAC 2 cut(s) 721, 1008
Mox20I TGGCCA 2 cut(s) 398, 1171
MscI TGGCCA 2 cut(s) 398, 1171
MseI TTAA 3 cut(s) 324, 408, 803
Msp20I TGGCCA 2 cut(s) 398, 1171
MspA1I CMGCKG 2 cut(s) 166, 641
MspI CCGG 7 cut(s) 65, 521, 533, 678, 737, 746, 1087
MspR9I CCNGG 5 cut(s) 66, 188, 534, 678, 737
Mva1269I GAATGC 1 cut(s) 1201
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 5 cut(s) 475, 602, 689, 1364, 1409
NciI CCSGG 4 cut(s) 66, 534, 678, 737
NdeII GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
NlaIII CATG 4 cut(s) 257, 498, 1151, 1233
NlaIV GGNNCC 5 cut(s) 675, 856, 857, 982, 1062
NmeAIII GCCGAG 1 cut(s) 1438
NmuCI GTSAC 3 cut(s) 133, 314, 1082
PaeR7I CTCGAG 1 cut(s) 1008
PagI TCATGA 1 cut(s) 253
PceI AGGCCT 1 cut(s) 596
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 408
PctI GAATGC 1 cut(s) 1201
PfoI TCCNGGA 2 cut(s) 64, 186
PinAI ACCGGT 3 cut(s) 520, 745, 1086
PkrI GCNGC 5 cut(s) 165, 168, 471, 640, 1357
PleI GAGTC 7 cut(s) 102, 286, 311, 346, 942, 1089, 1275
PpsI GAGTC 7 cut(s) 102, 286, 311, 346, 942, 1089, 1275
PpuMI RGGWCCY 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 2 cut(s) 378, 641
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 5 cut(s) 675, 856, 857, 982, 1062
PspPI GGNCC 6 cut(s) 100, 523, 743, 855, 1026, 1069
PspPPI RGGWCCY 1 cut(s) 855
PspXI VCTCGAGB 1 cut(s) 1008
PsrI GAACNNNNNNTAC 2 cut(s) 558, 590
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 3 cut(s) 508, 1294, 1416
PvuII CAGCTG 2 cut(s) 166, 641
RsaI GTAC 5 cut(s) 282, 414, 436, 567, 1050
RsaNI GTAC 5 cut(s) 281, 413, 435, 566, 1049
Rsr2I CGGWCCG 1 cut(s) 743
RsrII CGGWCCG 1 cut(s) 743
SalI GTCGAC 1 cut(s) 1090
SaqAI TTAA 3 cut(s) 324, 408, 803
SatI GCNGC 5 cut(s) 164, 167, 470, 639, 1356
Sau3AI GATC 9 cut(s) 81, 276, 508, 632, 645, 973, 1128, 1294, 1416
Sau96I GGNCC 6 cut(s) 100, 523, 743, 855, 1026, 1069
SchI GAGTC 7 cut(s) 102, 286, 311, 347, 943, 1090, 1276
ScrFI CCNGG 5 cut(s) 66, 188, 534, 678, 737
SduI GDGCHC 1 cut(s) 1063
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 598
Sfr274I CTCGAG 1 cut(s) 1008
SinI GGWCC 5 cut(s) 523, 743, 855, 1026, 1069
SlaI CTCGAG 1 cut(s) 1008
SmlI CTYRAG 6 cut(s) 201, 228, 793, 862, 1008, 1325
SmoI CTYRAG 6 cut(s) 201, 228, 793, 862, 1008, 1325
Sse9I AATT 3 cut(s) 1074, 1319, 1435
SseBI AGGCCT 1 cut(s) 596
SsiI CCGC 4 cut(s) 665, 728, 849, 1116
SspMI CTAG 2 cut(s) 71, 359
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 5 cut(s) 64, 186, 532, 676, 735
TaaI ACNGT 5 cut(s) 133, 303, 554, 610, 809
TaiI ACGT 4 cut(s) 48, 261, 414, 1410
TaqI TCGA 9 cut(s) 93, 336, 465, 480, 995, 1009, 1091, 1127, 1134
TasI AATT 3 cut(s) 1074, 1319, 1435
TatI WGTACW 1 cut(s) 565
Tru1I TTAA 3 cut(s) 324, 408, 803
Tru9I TTAA 3 cut(s) 324, 408, 803
TscAI CASTG 2 cut(s) 306, 831
TseFI GTSAC 3 cut(s) 133, 314, 1082
TseI GCWGC 5 cut(s) 163, 166, 469, 638, 1355
Tsp45I GTSAC 3 cut(s) 133, 314, 1082
TspDTI ATGAA 8 cut(s) 133, 483, 498, 828, 890, 1208, 1259, 1326
TspRI CASTG 2 cut(s) 306, 831
VpaK11BI GGWCC 5 cut(s) 523, 743, 855, 1026, 1069
XapI RAATTY 1 cut(s) 1074
XhoI CTCGAG 1 cut(s) 1008
XmiI GTMKAC 2 cut(s) 1091, 1388
XspI CTAG 2 cut(s) 71, 359
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.