Rorug03G0212000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000418
Physical Location & Seq
Forward (+)
19002019 .. 19002561
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0212000.1

Sequence Viewer

Length: 543 bp
ATGGAGAACTTGAAGCTGAGGGCTCCAATGCTGGTTGTTCCGCAGGAGATCGCCTCGAAGTCCGCGACTTTGATCCCTAGGTTATCTGCGACAGGTACCGAGGGTTCAAGAATGGAGTTTTCATCCATGCAATTGGTCCCGGTGGGGAGAAAGAGAAAGGCTGCATTTTATTTGGATCGCCTTGGGAAGAAGTACTTAACTTTCCCCGAGTCGAAGCTGGAGGTTGGGGAGAGTGTCTCTTTGATTGTCCAACACAAGAATGGTAAGCTTCTGGTCTCACCAAAGAAGAAGAAAGGGGGACGAGCTAAGGGAAGCAAAAATAAGATTAAGCATGCAGATGAACAAGCAGTGAAGAAGATACGTAAGTATAAGCGTAGAGGGAAAATTTTGAATTCTGATTCCTCAAGGGAAGCGTTGGATACTGCCACTGTGGAGGAGGTAGGGCCTATGCAGATGGGGGCAGATGAGGTTGTGAAGGAGCTCCCGGTTATGGAGGGAGAGCTGGAAGGTGACACGTCACCTTCTAGGGCTAGTTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.82

Weight (kDa)

9.93

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 41, 63
AclWI GGATC 2 cut(s) 67, 183
AcsI RAATTY 2 cut(s) 384, 391
AfaI GTAC 2 cut(s) 97, 194
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 3 cut(s) 13, 108, 391
AjiI CACGTC 1 cut(s) 516
AluBI AGCT 6 cut(s) 16, 217, 268, 305, 481, 502
AluI AGCT 6 cut(s) 16, 217, 268, 305, 481, 502
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 2 cut(s) 241, 280
AlwI GGATC 2 cut(s) 67, 183
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 384, 391
Asp718I GGTACC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 136, 443
AsuC2I CCSGG 2 cut(s) 140, 485
AsuHPI GGTGA 3 cut(s) 270, 510, 521
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 136
AvrII CCTAGG 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 2 cut(s) 25, 483
Bbv12I GWGCWC 1 cut(s) 483
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 448
BciVI GTATCC 1 cut(s) 412
BcnI CCSGG 2 cut(s) 140, 485
BcoDI GTCTC 2 cut(s) 241, 280
BfaI CTAG 3 cut(s) 78, 525, 531
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 1 cut(s) 162
BlnI CCTAGG 1 cut(s) 77
BlsI GCNGC 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 140, 485
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 136, 443
BmiI GGNNCC 3 cut(s) 24, 97, 138
BmrFI CCNGG 2 cut(s) 140, 485
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 221, 253
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 2 cut(s) 17, 306
BpuEI CTTGAG 1 cut(s) 388
BpuMI CCSGG 2 cut(s) 140, 485
BsaAI YACGTR 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 77, 99, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 490
BseDI CCNNGG 3 cut(s) 77, 99, 181
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 445
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 2 cut(s) 140, 485
BslFI GGGAC 2 cut(s) 122, 312
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 2 cut(s) 241, 280
BsmFI GGGAC 2 cut(s) 122, 312
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 25, 483
Bsp143I GATC 3 cut(s) 48, 72, 175
BspACI CCGC 2 cut(s) 41, 63
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 1 cut(s) 9
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 3 cut(s) 24, 97, 138
BspPI GGATC 2 cut(s) 67, 183
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 77, 99, 181
BssMI GATC 3 cut(s) 48, 72, 175
BssT1I CCWWGG 2 cut(s) 77, 181
Bst4CI ACNGT 1 cut(s) 430
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 17, 306
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 51, 75, 178
BstMAI GTCTC 2 cut(s) 241, 280
BstMBI GATC 3 cut(s) 48, 72, 175
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 138, 483
BstSNI TACGTA 1 cut(s) 362
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 445
BtrI CACGTC 1 cut(s) 516
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 354, 426
Cac8I GCNNGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 136, 443
Csp6I GTAC 2 cut(s) 96, 193
CviAII CATG 2 cut(s) 127, 332
CviQI GTAC 2 cut(s) 96, 193
DdeI CTNAG 2 cut(s) 17, 306
DpnI GATC 3 cut(s) 50, 74, 177
DpnII GATC 3 cut(s) 48, 72, 175
Ecl136II GAGCTC 1 cut(s) 481
Eco105I TACGTA 1 cut(s) 362
Eco130I CCWWGG 2 cut(s) 77, 181
Eco24I GRGCYC 2 cut(s) 25, 483
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 77, 181
EcoT38I GRGCYC 2 cut(s) 25, 483
ErhI CCWWGG 2 cut(s) 77, 181
FaeI CATG 2 cut(s) 130, 335
FaiI YATR 5 cut(s) 128, 333, 369, 449, 491
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 122, 312
FatI CATG 2 cut(s) 126, 331
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 2 cut(s) 25, 483
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 3 cut(s) 78, 525, 531
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 445
HapII CCGG 2 cut(s) 140, 485
Hin1II CATG 2 cut(s) 130, 335
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 209, 398
HpaII CCGG 2 cut(s) 140, 485
HphI GGTGA 3 cut(s) 270, 510, 521
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 469, 500, 531
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 2 cut(s) 361, 515
HpyCH4V TGCA 4 cut(s) 130, 164, 335, 451
HpyF3I CTNAG 2 cut(s) 17, 306
HpySE526I ACGT 2 cut(s) 361, 515
Hsp92II CATG 2 cut(s) 130, 335
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 48, 72, 175
LmnI GCTCC 3 cut(s) 28, 478, 486
LpnPI CCDG 8 cut(s) 17, 29, 78, 153, 203, 257, 488, 498
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 3 cut(s) 78, 525, 531
MaeII ACGT 2 cut(s) 361, 515
MaeIII GTNAC 2 cut(s) 509, 516
MalI GATC 3 cut(s) 50, 74, 177
MboI GATC 3 cut(s) 48, 72, 175
MboII GAAGA 5 cut(s) 199, 298, 301, 364, 367
MfeI CAATTG 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 25, 483
MluCI AATT 4 cut(s) 131, 384, 391, 537
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 274, 396
MseI TTAA 3 cut(s) 197, 327, 536
MslI CAYNNNNRTG 2 cut(s) 258, 336
MspI CCGG 2 cut(s) 140, 485
MspR9I CCNGG 2 cut(s) 140, 485
MunI CAATTG 1 cut(s) 131
MvnI CGCG 1 cut(s) 65
NciI CCSGG 2 cut(s) 140, 485
NdeII GATC 3 cut(s) 48, 72, 175
NlaIII CATG 2 cut(s) 130, 335
NlaIV GGNNCC 3 cut(s) 24, 97, 138
NmuCI GTSAC 2 cut(s) 509, 516
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 24, 97, 138
PspPI GGNCC 2 cut(s) 136, 443
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
RsaI GTAC 2 cut(s) 97, 194
RsaNI GTAC 2 cut(s) 96, 193
RseI CAYNNNNRTG 2 cut(s) 258, 336
SacI GAGCTC 1 cut(s) 483
SaqAI TTAA 3 cut(s) 197, 327, 536
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 48, 72, 175
Sau96I GGNCC 2 cut(s) 136, 443
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 140, 485
SduI GDGCHC 2 cut(s) 25, 483
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 258, 336
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
SnaBI TACGTA 1 cut(s) 362
SphI GCATGC 1 cut(s) 335
Sse9I AATT 4 cut(s) 131, 384, 391, 537
SsiI CCGC 2 cut(s) 41, 63
SspMI CTAG 3 cut(s) 78, 525, 531
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 2 cut(s) 138, 483
StyI CCWWGG 2 cut(s) 77, 181
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 2 cut(s) 364, 518
TaqI TCGA 2 cut(s) 56, 212
TasI AATT 4 cut(s) 131, 384, 391, 537
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 3 cut(s) 197, 327, 536
Tru9I TTAA 3 cut(s) 197, 327, 536
TscAI CASTG 2 cut(s) 354, 433
TseFI GTSAC 2 cut(s) 509, 516
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 509, 516
TspDTI ATGAA 2 cut(s) 111, 354
TspRI CASTG 2 cut(s) 354, 433
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 384, 391
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmaJI CCTAGG 1 cut(s) 77
XspI CTAG 3 cut(s) 78, 525, 531
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.