Rmu_sc0003628.1_g000026
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003628.1
OG0000418
Physical Location & Seq
Reverse (-)
73205 .. 74032
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003628.1_g000026.1.cds

Sequence Viewer

Length: 828 bp
atggcaattctctccaacaaactcccagtcggggttaggttccttcccactgaccaggaactgctcgattactatctccgctcaaggatcgccatgggtgaccagtttcgcaccgatttcgtcgccgattgtcctcatttcttcggagacaaggagccctgggttgtctggcagatctacggcggcgctgagtccaagaaagtggaggatgaaaacactctctattttttcacccatcggagaaggctgagtcccaccgccaagagatttgatcggaaagtgggttccggcacttggagtggtcaatattcgagagaagttgaggatgatggtgttgttcttgggctcaagcgggagttcagatacgagggcggatgtgacgagagtcacaacgacggttggttgatgcaagagtttcagcttgatgatgattccgatttggtactgtgctctctgagaaagaaccccagaaaggctcaggggagcaataccagagtagttaatcataaaaagagaaagagcattccacaacccagaaagccaaaatctaaaaggcagaaaaaggaagggacttgtcatcaggaagaaggcagcagtactgttcatcccaattacgagttgccctatccacaaatggatgttcatcccaatcacgagttgccctatccacaaatggatgatctagattttgattttcctgagatttatccagatctgtttgttgatgatgggcgtgatttatttactatggatcaattgcttggacaaaccccagtttgggaggagggcaacaacttcaatttggttacaggagtaccacttctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

275

Amino Acids

31.94

Weight (kDa)

5.44

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 5 cut(s) 79, 183, 258, 352, 372
AclWI GGATC 2 cut(s) 95, 759
AfaI GTAC 3 cut(s) 444, 598, 816
AfiI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 777, 778
AgsI TTSAA 1 cut(s) 799
AjnI CCWGG 2 cut(s) 54, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 95, 759
AlwNI CAGNNNCTG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 591
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 110, 223
BaeI ACNNNNGTAYC 1 cut(s) 798
BanII GRGCYC 2 cut(s) 159, 348
BauI CACGAG 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 603
BccI CCATC 3 cut(s) 243, 323, 722
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 2 cut(s) 56, 160
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 683
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 2 cut(s) 174, 712
BisI GCNGC 2 cut(s) 184, 592
BlsI GCNGC 2 cut(s) 185, 593
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 56, 160
BmiI GGNNCC 3 cut(s) 41, 156, 286
BmrFI CCNGG 2 cut(s) 56, 160
BmrI ACTGGG 2 cut(s) 20, 767
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 2 cut(s) 20, 767
BoxI GACNNNNGTC 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 2 cut(s) 67, 332
BsaBI GATNNNNATC 2 cut(s) 72, 642
BsaJI CCNNGG 3 cut(s) 93, 158, 159
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 294, 472, 777, 778
Bse1I ACTGG 3 cut(s) 26, 103, 773
Bse8I GATNNNNATC 2 cut(s) 72, 642
BseBI CCWGG 2 cut(s) 56, 160
BseDI CCNNGG 3 cut(s) 93, 158, 159
BseGI GGATG 7 cut(s) 214, 331, 380, 604, 643, 643, 682
BseJI GATNNNNATC 2 cut(s) 72, 642
BseLI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 777, 778
BseMII CTCAG 5 cut(s) 180, 239, 446, 491, 690
BseNI ACTGG 3 cut(s) 26, 103, 773
BseRI GAGGAG 1 cut(s) 797
BseXI GCAGC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 237, 583
BslI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 777, 778
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 237, 583
BsmI GAATGC 1 cut(s) 522
Bsp1286I GDGCHC 3 cut(s) 159, 348, 452
Bsp143I GATC 6 cut(s) 87, 174, 271, 679, 712, 751
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 5 cut(s) 79, 183, 258, 352, 372
BspCNI CTCAG 5 cut(s) 181, 240, 447, 490, 691
BspLI GGNNCC 3 cut(s) 41, 156, 286
BspPI GGATC 2 cut(s) 95, 759
BsrBI CCGCTC 1 cut(s) 81
BsrI ACTGG 3 cut(s) 26, 103, 773
BssECI CCNNGG 3 cut(s) 93, 158, 159
BssMI GATC 6 cut(s) 87, 174, 271, 679, 712, 751
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 2 cut(s) 56, 160
Bst4CI ACNGT 3 cut(s) 398, 447, 601
BstDEI CTNAG 5 cut(s) 189, 248, 455, 477, 699
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 7 cut(s) 214, 331, 380, 604, 643, 643, 682
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 6 cut(s) 90, 177, 274, 682, 715, 754
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 6 cut(s) 87, 174, 271, 679, 712, 751
BstNI CCWGG 2 cut(s) 56, 160
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 54, 158
BstV1I GCAGC 1 cut(s) 603
BstX2I RGATCY 2 cut(s) 174, 712
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 174, 712
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 7 cut(s) 214, 331, 380, 604, 643, 643, 682
BtsIMutI CAGTG 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 443, 597, 815
CviAII CATG 1 cut(s) 94
CviJI RGCY 6 cut(s) 157, 247, 346, 421, 476, 541
CviKI_1 RGCY 6 cut(s) 157, 247, 346, 421, 476, 541
CviQI GTAC 3 cut(s) 443, 597, 815
DdeI CTNAG 5 cut(s) 189, 248, 455, 477, 699
DpnI GATC 6 cut(s) 89, 176, 273, 681, 714, 753
DpnII GATC 6 cut(s) 87, 174, 271, 679, 712, 751
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 159, 348
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 54, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 159, 348
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 507, 749
FaqI GGGAC 2 cut(s) 237, 583
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 184, 592
FokI GGATG 7 cut(s) 221, 338, 387, 591, 630, 650, 689
FriOI GRGCYC 2 cut(s) 159, 348
Fsp4HI GCNGC 2 cut(s) 184, 592
FspBI CTAG 1 cut(s) 683
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 184, 592
HaeII RGCGCY 1 cut(s) 189
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 4 cut(s) 191, 250, 385, 431
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 110, 223
Hpy188I TCNGA 6 cut(s) 146, 240, 276, 362, 436, 456
Hpy188III TCNNGA 6 cut(s) 312, 581, 653, 683, 698, 710
Hpy99I CGWCG 2 cut(s) 125, 398
HpyAV CCTTC 4 cut(s) 53, 237, 560, 581
HpyCH4III ACNGT 3 cut(s) 398, 447, 601
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 5 cut(s) 189, 248, 455, 477, 699
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 6 cut(s) 87, 174, 271, 679, 712, 751
LmnI GCTCC 2 cut(s) 154, 483
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 1 cut(s) 396
MaeI CTAG 1 cut(s) 683
MaeIII GTNAC 4 cut(s) 98, 377, 386, 805
MalI GATC 6 cut(s) 89, 176, 273, 681, 714, 753
MbiI CCGCTC 1 cut(s) 81
MboI GATC 6 cut(s) 87, 174, 271, 679, 712, 751
MboII GAAGA 2 cut(s) 133, 596
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 2 cut(s) 174, 712
MhlI GDGCHC 3 cut(s) 159, 348, 452
MluCI AATT 4 cut(s) 6, 610, 755, 799
MlyI GAGTC 3 cut(s) 200, 259, 394
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 6 cut(s) 144, 199, 316, 361, 775, 778
MseI TTAA 1 cut(s) 501
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 56, 160
MunI CAATTG 1 cut(s) 755
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 2 cut(s) 56, 160
NcoI CCATGG 1 cut(s) 93
NdeII GATC 6 cut(s) 87, 174, 271, 679, 712, 751
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 41, 156, 286
NmuCI GTSAC 3 cut(s) 98, 377, 386
PasI CCCWGGG 1 cut(s) 159
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 185, 593
PleI GAGTC 3 cut(s) 199, 258, 393
PpsI GAGTC 3 cut(s) 199, 258, 393
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 54, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 54, 158
PspN4I GGNNCC 3 cut(s) 41, 156, 286
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 174, 712
RsaI GTAC 3 cut(s) 444, 598, 816
RsaNI GTAC 3 cut(s) 443, 597, 815
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 2 cut(s) 184, 592
Sau3AI GATC 6 cut(s) 87, 174, 271, 679, 712, 751
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 200, 259, 394
ScrFI CCNGG 2 cut(s) 56, 160
SduI GDGCHC 3 cut(s) 159, 348, 452
SetI ASST 2 cut(s) 41, 423
SfaNI GCATC 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 82, 347
SmoI CTYRAG 2 cut(s) 82, 347
Sse9I AATT 4 cut(s) 6, 610, 755, 799
SsiI CCGC 5 cut(s) 79, 183, 258, 352, 372
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 683
StyD4I CCNGG 2 cut(s) 54, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 398, 447, 601
TaqI TCGA 2 cut(s) 66, 311
TasI AATT 4 cut(s) 6, 610, 755, 799
TatI WGTACW 1 cut(s) 596
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 3 cut(s) 98, 377, 386
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 3 cut(s) 98, 377, 386
TspDTI ATGAA 3 cut(s) 225, 593, 632
TspRI CASTG 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 682
XspI CTAG 1 cut(s) 683
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.