Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Reverse (-)

4675424 .. 4676162

Gene Structure 739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGCCTGATGAGCTGAATGTGGAGCCGGTGGTTGTTCCTTCGGCTGTGAAATTCAGAGACTATCAATGTAACAATGCCATGGACATATGGTCTAAGATTGAGGGAAAGGGAACTGCATTCGAGAATCCTAATTCTGTTGGACAGGCCGTCATGGGAAATCTTCCTAAATCAGAAATAATAGAGTCGTGCACGGTAGCAGGGCCTGGGCACTTTGTTAATGTTGTGTTGTCGAAGAGTTGGATGGCTGAGAGCTTACAAAAGATGCTTATTGATGGGATCGAAACATGGCCACCACAGCTCCAGATCAAACGGGCTGTTGTAGACTTTTCGTCACCTAATATTGCCAAGGAAATGCACGTTGGCCATCTGCGATCTACAATTATTGGGGACACGCTAGCCCGGATCCTTGAGTTTTCCAAAGTTGAAGTTCTTCGGCTTAATCATGTTGGTGATCGATTTCCAAACGTGGATGATGTTAATGAAATGGAAATCGGTGATCTTCAGGAATTCTATAAGCAATCAAACAAGAGATTTGATGAGGATCCGGCCTTCAAGGAGAGAGCACAAGCTGCAGTGGTATCCCTTCAGGGTGGGACTCCCAAGTACAGTGAGGCATGGCTTCAAATCTGTGAAGTCAACCGTAGAGAGTTTCAAATGGTCTATGAACGCCTTGGAATTCAATTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

230

Amino Acids

25.94

Weight (kDa)

5.07

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arg_tRNA_synt_N	PF03485	8 - 77	1.2e-10	Arginyl tRNA synthetase N terminal domain
tRNA-synt_1d	PF00750	90 - 229	1.9e-39	tRNA synthetases class I (R), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	324
AclWI	GGATC	5 cut(s)	287, 400, 413, 539, 552
AcoI	YGGCCR	2 cut(s)	290, 364
AcsI	RAATTY	3 cut(s)	53, 509, 678
AcuI	CTGAAG	2 cut(s)	488, 572
AfaI	GTAC	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	428, 556, 626, 656, 683
AhdI	GACNNNNNGTC	3 cut(s)	91, 149, 331
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	4 cut(s)	16, 255, 301, 572
AluI	AGCT	4 cut(s)	16, 255, 301, 572
Alw21I	GWGCWC	2 cut(s)	194, 568
Alw26I	GTCTC	1 cut(s)	54
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	5 cut(s)	287, 400, 413, 539, 552
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	5 cut(s)	147, 203, 290, 364, 549
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	3 cut(s)	53, 509, 678
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	327, 464, 509
AsuNHI	GCTAGC	1 cut(s)	397
BaeGI	GKGCMC	2 cut(s)	194, 213
BalI	TGGCCA	2 cut(s)	292, 366
BamHI	GGATCC	2 cut(s)	405, 544
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	194, 568
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	3 cut(s)	238, 269, 375
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	573
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	207, 403
BmeRI	GACNNNNNGTC	3 cut(s)	91, 149, 331
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	6, 27, 407, 546
BmrFI	CCNGG	2 cut(s)	207, 403
BmsI	GCATC	1 cut(s)	255
BmtI	GCTAGC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	4 cut(s)	81, 206, 348, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bse118I	RCCGGY	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	4 cut(s)	81, 206, 348, 673
BseGI	GGATG	2 cut(s)	249, 478
BseJI	GATNNNNATC	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	240
BseSI	GKGCMC	2 cut(s)	194, 213
BseXI	GCAGC	1 cut(s)	559
BshFI	GGCC	5 cut(s)	149, 205, 292, 366, 551
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	457
BsiHKAI	GWGCWC	2 cut(s)	194, 568
BsiSI	CCGG	3 cut(s)	29, 403, 548
BslFI	GGGAC	2 cut(s)	404, 610
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	404, 610
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	5 cut(s)	149, 205, 292, 366, 551
Bsp1286I	GDGCHC	3 cut(s)	194, 213, 568
Bsp143I	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	5 cut(s)	149, 205, 292, 366, 551
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	4 cut(s)	6, 27, 407, 546
BspMAI	CTGCAG	1 cut(s)	577
BspOI	GCTAGC	1 cut(s)	401
BspPI	GGATC	5 cut(s)	287, 400, 413, 539, 552
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	81, 206, 348, 673
BssMI	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
BssT1I	CCWWGG	3 cut(s)	81, 348, 673
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	196, 611, 644
Bst6I	CTCTTC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	96, 249
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	249, 478
BstKTI	GATC	7 cut(s)	282, 309, 377, 408, 457, 502, 547
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 298, 572
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 401
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	2 cut(s)	194, 213
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	405, 544
BstYI	RGATCY	2 cut(s)	405, 544
Bsu15I	ATCGAT	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	5 cut(s)	149, 205, 292, 366, 551
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	249, 478
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	582, 616
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	5 cut(s)	82, 154, 288, 446, 618
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	2 cut(s)	96, 249
DpnI	GATC	7 cut(s)	281, 308, 376, 407, 456, 501, 546
DpnII	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
DriI	GACNNNNNGTC	3 cut(s)	91, 149, 331
EaeI	YGGCCR	2 cut(s)	290, 364
Eam1104I	CTCTTC	1 cut(s)	230
Eam1105I	GACNNNNNGTC	3 cut(s)	91, 149, 331
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	3 cut(s)	81, 348, 673
Eco57I	CTGAAG	2 cut(s)	488, 572
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRI	GAATTC	2 cut(s)	509, 678
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	3 cut(s)	81, 348, 673
ErhI	CCWWGG	3 cut(s)	81, 348, 673
FaeI	CATG	5 cut(s)	85, 157, 291, 449, 621
FaiI	YATR	9 cut(s)	83, 89, 91, 155, 289, 447, 516, 619, 666
FaqI	GGGAC	2 cut(s)	404, 610
FatI	CATG	5 cut(s)	81, 153, 287, 445, 617
FauNDI	CATATG	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	2 cut(s)	256, 485
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	149, 205, 292, 366, 551
HapII	CCGG	3 cut(s)	29, 403, 548
Hin1II	CATG	5 cut(s)	85, 157, 291, 449, 621
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	3 cut(s)	127, 185, 598
HpaII	CCGG	3 cut(s)	29, 403, 548
HphI	GGTGA	3 cut(s)	327, 464, 509
Hpy166II	GTNNAC	3 cut(s)	192, 325, 640
Hpy188I	TCNGA	2 cut(s)	59, 175
Hpy188III	TCNNGA	3 cut(s)	124, 304, 506
Hpy8I	GTNNAC	3 cut(s)	192, 325, 640
HpyAV	CCTTC	3 cut(s)	51, 562, 596
HpyCH4III	ACNGT	3 cut(s)	196, 611, 644
HpyCH4IV	ACGT	2 cut(s)	360, 468
HpyCH4V	TGCA	4 cut(s)	119, 192, 358, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 298, 572
HpyF3I	CTNAG	2 cut(s)	96, 249
HpySE526I	ACGT	2 cut(s)	360, 468
Hsp92II	CATG	5 cut(s)	85, 157, 291, 449, 621
Kzo9I	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
LmnI	GCTCC	2 cut(s)	25, 306
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	360, 468
MaeIII	GTNAC	2 cut(s)	71, 333
MalI	GATC	7 cut(s)	281, 308, 376, 407, 456, 501, 546
MboI	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
MboII	GAAGA	4 cut(s)	155, 247, 425, 494
MflI	RGATCY	2 cut(s)	405, 544
MhlI	GDGCHC	3 cut(s)	194, 213, 568
MlsI	TGGCCA	2 cut(s)	292, 366
MluCI	AATT	6 cut(s)	53, 133, 381, 509, 678, 683
MluNI	TGGCCA	2 cut(s)	292, 366
MlyI	GAGTC	2 cut(s)	194, 592
MmeI	TCCRAC	2 cut(s)	121, 221
MnlI	CCTC	3 cut(s)	97, 535, 607
Mox20I	TGGCCA	2 cut(s)	292, 366
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	2 cut(s)	292, 366
MseI	TTAA	3 cut(s)	219, 441, 480
MslI	CAYNNNNRTG	1 cut(s)	450
Msp20I	TGGCCA	2 cut(s)	292, 366
MspI	CCGG	3 cut(s)	29, 403, 548
MspR9I	CCNGG	2 cut(s)	207, 403
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	13, 298, 572
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	89
NdeII	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	5 cut(s)	85, 157, 291, 449, 621
NlaIV	GGNNCC	4 cut(s)	6, 27, 407, 546
NmuCI	GTSAC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	2 cut(s)	193, 592
PpsI	GAGTC	2 cut(s)	193, 592
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	6, 27, 407, 546
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	405, 544
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	219, 441, 480
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	7 cut(s)	279, 306, 374, 405, 454, 499, 544
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	194, 592
ScrFI	CCNGG	2 cut(s)	207, 403
SduI	GDGCHC	3 cut(s)	194, 213, 568
SetI	ASST	7 cut(s)	18, 257, 303, 340, 363, 471, 574
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	6 cut(s)	53, 133, 381, 509, 678, 683
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	205, 401
StyI	CCWWGG	3 cut(s)	81, 348, 673
TaaI	ACNGT	3 cut(s)	196, 611, 644
TaiI	ACGT	2 cut(s)	363, 471
TaqI	TCGA	4 cut(s)	123, 233, 282, 457
TasI	AATT	6 cut(s)	53, 133, 381, 509, 678, 683
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	219, 441, 480
Tru9I	TTAA	3 cut(s)	219, 441, 480
TscAI	CASTG	2 cut(s)	582, 616
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	498, 681
TspRI	CASTG	2 cut(s)	582, 616
VneI	GTGCAC	1 cut(s)	190
XapI	RAATTY	3 cut(s)	53, 509, 678
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.