Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001792.1

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

127608 .. 128421

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001792.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggcagctggaggagagaatgtggcgagtttgaagcggcagttagtgcaactgtttgaagtgtccattggaacaatggtgcctgatgagctgaatgtggagccggtggttgttccttcggctgtgaaattcagagactatcaatgtaacaatgccatggacatatggtctaagattgagggaaagggaactgcattcgagaatcctaattctgttggacaggccatcatgggaaatcttcctaaatcagaaataatagagtcgtgcacggtagcagggcctgggcactttgttaatgttgtgttgtcgaagagttggatggctaagagcttacaaaagatgcttattgatgggatcgaaacatggccaccacagctccagatcaaacgggctgttgtagacttttcgtcacctaatattgccaaggaaatgcacgttggccatctgcgatctacaattattggggacacgctagcccggatccttgagttttccaaagttgaagttcttcggcgtaatcatgttggtgatcgagaattctataagcaatcaaacaagagatttgatgaggatccggccttcaaggagagagcacaagctgcagtggtatcccttcagggtgggactcccaagtacagtgaggcatggcttcaaatctgtgaagtcaaccgtagagagtttcaaatggtctatgaacgccttggaattcaattagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

239

Amino Acids

26.78

Weight (kDa)

6.46

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	5 cut(s)	362, 475, 488, 566, 579
AcoI	YGGCCR	2 cut(s)	365, 439
AcsI	RAATTY	3 cut(s)	128, 536, 705
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	635
AgsI	TTSAA	7 cut(s)	34, 59, 503, 583, 653, 683, 710
AhdI	GACNNNNNGTC	2 cut(s)	166, 406
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 420, 452
AluBI	AGCT	5 cut(s)	8, 91, 330, 376, 599
AluI	AGCT	5 cut(s)	8, 91, 330, 376, 599
Alw21I	GWGCWC	2 cut(s)	269, 595
Alw26I	GTCTC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	265
AlwI	GGATC	5 cut(s)	362, 475, 488, 566, 579
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	5 cut(s)	222, 278, 365, 439, 576
ApaLI	GTGCAC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	5, 599
ApoI	RAATTY	3 cut(s)	128, 536, 705
Asp700I	GAANNNNTTC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	402, 539
AsuNHI	GCTAGC	1 cut(s)	472
BaeGI	GKGCMC	2 cut(s)	269, 288
BalI	TGGCCA	2 cut(s)	367, 441
BamHI	GGATCC	2 cut(s)	480, 571
BanI	GGYRCC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	269, 595
BbvI	GCAGC	2 cut(s)	17, 586
BccI	CCATC	4 cut(s)	233, 313, 344, 450
BciT130I	CCWGG	1 cut(s)	282
BciVI	GTATCC	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	600
BfuI	GTATCC	1 cut(s)	619
BisI	GCNGC	3 cut(s)	6, 38, 600
BlsI	GCNGC	3 cut(s)	7, 39, 601
Bme1390I	CCNGG	2 cut(s)	282, 478
BmeRI	GACNNNNNGTC	2 cut(s)	166, 406
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	4 cut(s)	81, 102, 482, 573
BmrFI	CCNGG	2 cut(s)	282, 478
BmsI	GCATC	1 cut(s)	330
BmtI	GCTAGC	1 cut(s)	476
BpmI	CTGGAG	2 cut(s)	30, 362
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	4 cut(s)	156, 281, 423, 700
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 360, 390
Bse118I	RCCGGY	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	4 cut(s)	156, 281, 423, 700
BseGI	GGATG	1 cut(s)	324
BseJI	GATNNNNATC	1 cut(s)	570
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	2 cut(s)	269, 288
BseXI	GCAGC	2 cut(s)	17, 586
BshFI	GGCC	5 cut(s)	224, 280, 367, 441, 578
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	269, 595
BsiSI	CCGG	3 cut(s)	104, 478, 575
BslFI	GGGAC	2 cut(s)	479, 637
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	479, 637
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	5 cut(s)	224, 280, 367, 441, 578
Bsp1286I	GDGCHC	3 cut(s)	269, 288, 595
Bsp143I	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	5 cut(s)	224, 280, 367, 441, 578
BspLI	GGNNCC	4 cut(s)	81, 102, 482, 573
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	5 cut(s)	362, 475, 488, 566, 579
BspT107I	GGYRCC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	4 cut(s)	156, 281, 423, 700
BssMI	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
BssT1I	CCWWGG	3 cut(s)	156, 423, 700
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	54, 271, 638, 671
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	2 cut(s)	46, 599
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	171, 324
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	6 cut(s)	357, 384, 452, 483, 532, 574
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 88, 373, 599
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	280, 476
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	2 cut(s)	269, 288
BstV1I	GCAGC	2 cut(s)	17, 586
BstX2I	RGATCY	2 cut(s)	480, 571
BstYI	RGATCY	2 cut(s)	480, 571
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	5 cut(s)	224, 280, 367, 441, 578
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	609, 643
Cac8I	GCNNGC	1 cut(s)	474
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	5 cut(s)	157, 229, 363, 521, 645
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	2 cut(s)	171, 324
DpnI	GATC	6 cut(s)	356, 383, 451, 482, 531, 573
DpnII	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
DriI	GACNNNNNGTC	2 cut(s)	166, 406
EaeI	YGGCCR	2 cut(s)	365, 439
Eam1104I	CTCTTC	1 cut(s)	305
Eam1105I	GACNNNNNGTC	2 cut(s)	166, 406
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	3 cut(s)	156, 423, 700
Eco57I	CTGAAG	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	2 cut(s)	536, 705
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	3 cut(s)	156, 423, 700
ErhI	CCWWGG	3 cut(s)	156, 423, 700
FaeI	CATG	5 cut(s)	160, 232, 366, 524, 648
FaiI	YATR	9 cut(s)	158, 164, 166, 230, 364, 522, 543, 646, 693
FaqI	GGGAC	2 cut(s)	479, 637
FatI	CATG	5 cut(s)	156, 228, 362, 520, 644
FauNDI	CATATG	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	6, 38, 600
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	6, 38, 600
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	3 cut(s)	6, 38, 600
GsuI	CTGGAG	2 cut(s)	30, 362
HaeIII	GGCC	5 cut(s)	224, 280, 367, 441, 578
HapII	CCGG	3 cut(s)	104, 478, 575
Hin1II	CATG	5 cut(s)	160, 232, 366, 524, 648
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	3 cut(s)	202, 260, 625
HpaII	CCGG	3 cut(s)	104, 478, 575
HphI	GGTGA	2 cut(s)	402, 539
Hpy166II	GTNNAC	3 cut(s)	267, 400, 667
Hpy188I	TCNGA	2 cut(s)	134, 250
Hpy188III	TCNNGA	3 cut(s)	199, 379, 533
Hpy8I	GTNNAC	3 cut(s)	267, 400, 667
HpyAV	CCTTC	3 cut(s)	126, 589, 623
HpyCH4III	ACNGT	4 cut(s)	54, 271, 638, 671
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	49, 194, 267, 433, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 88, 373, 599
HpyF3I	CTNAG	2 cut(s)	171, 324
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	5 cut(s)	160, 232, 366, 524, 648
Kzo9I	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
LmnI	GCTCC	2 cut(s)	100, 381
Lsp1109I	GCAGC	2 cut(s)	17, 586
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	146, 408
MalI	GATC	6 cut(s)	356, 383, 451, 482, 531, 573
MboI	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
MboII	GAAGA	3 cut(s)	230, 322, 500
MflI	RGATCY	2 cut(s)	480, 571
MhlI	GDGCHC	3 cut(s)	269, 288, 595
MlsI	TGGCCA	2 cut(s)	367, 441
MluCI	AATT	6 cut(s)	128, 208, 456, 536, 705, 710
MluNI	TGGCCA	2 cut(s)	367, 441
MlyI	GAGTC	2 cut(s)	269, 619
MmeI	TCCRAC	2 cut(s)	196, 296
MnlI	CCTC	4 cut(s)	5, 172, 562, 634
Mox20I	TGGCCA	2 cut(s)	367, 441
MroXI	GAANNNNTTC	1 cut(s)	507
MscI	TGGCCA	2 cut(s)	367, 441
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	2 cut(s)	367, 441
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	3 cut(s)	104, 478, 575
MspR9I	CCNGG	2 cut(s)	282, 478
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	46, 88, 373, 599
NciI	CCSGG	1 cut(s)	478
NcoI	CCATGG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	160, 232, 366, 524, 648
NlaIV	GGNNCC	4 cut(s)	81, 102, 482, 573
NmuCI	GTSAC	1 cut(s)	408
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	7, 39, 601
PleI	GAGTC	2 cut(s)	268, 619
PpsI	GAGTC	2 cut(s)	268, 619
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	81, 102, 482, 573
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	480, 571
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	6, 38, 600
Sau3AI	GATC	6 cut(s)	354, 381, 449, 480, 529, 571
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	269, 619
ScrFI	CCNGG	2 cut(s)	282, 478
SduI	GDGCHC	3 cut(s)	269, 288, 595
SetI	ASST	7 cut(s)	10, 93, 332, 378, 415, 438, 601
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	6 cut(s)	128, 208, 456, 536, 705, 710
SsiI	CCGC	1 cut(s)	37
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	280, 476
StyI	CCWWGG	3 cut(s)	156, 423, 700
TaaI	ACNGT	4 cut(s)	54, 271, 638, 671
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	4 cut(s)	198, 308, 357, 532
TasI	AATT	6 cut(s)	128, 208, 456, 536, 705, 710
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	609, 643
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	2 cut(s)	5, 599
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	2 cut(s)	609, 643
VneI	GTGCAC	1 cut(s)	265
XapI	RAATTY	3 cut(s)	128, 536, 705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.