Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

1825349 .. 1827778

Gene Structure 2430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGGACTCTATCAGTGCAAAGAGGGCAAAGAGATCGATCCAGGATGATGTCTCCGACGACGACGACGCCGCCGCCGCAAGAGAAGCCTTCAAGAATATGAACGACTCTACCCGGCCAGAGAAATTTAAGGATTTTGTCGAACGCAGGGAAAAATTGAAAGAGATACATGCTGACATTGTCAAGGAGGAACACCTGTTTGTTGAGGAGAGAAAGAAATGGGTGGCGGATAACCGGAATCTCTATAGTGACATGAGATGTAATGTTGCTAAAGGAATCCCTAGCTTTTGGCATACTGCAATGATTGCTAACAAGATGGTTTCTAAGCAGATTGCAGAGAAAGATAAGGAGGCTCTGAACTTTCTGAATGATATCGAGTCCCGTAGGACAGCAGATTTGAAAGGATTTGAGCTGGAGTTCACCTTTGACGATCGTAATCCTTATTTTAAGAATAAGGTCTTGACTAAAAAGTATGAGGTGAAGGATGACAACCAGTCTGTTTCATTGAAGGCATTAGGGACTAAAATAGACTGGTATCCTTCTCAAAACTTAGCACAGGGTAAAAGCAGTGAAAGTTTCTTCAAGTTCTTTAATTCATATGCTTCTCTCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGCGACATTCCGATGGATTATGTAATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

226

Amino Acids

26.17

Weight (kDa)

5.59

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	42 - 186	1.3e-28	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 72, 75, 78, 227
AclWI	GGATC	2 cut(s)	34, 605
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	69
AgsI	TTSAA	5 cut(s)	94, 160, 400, 508, 583
AhdI	GACNNNNNGTC	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	285, 412, 635
AluI	AGCT	3 cut(s)	285, 412, 635
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	2 cut(s)	34, 605
AoxI	GGCC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	412, 490
BccI	CCATC	2 cut(s)	310, 655
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	3 cut(s)	72, 75, 78
BlsI	GCNGC	3 cut(s)	73, 76, 79
Bme1390I	CCNGG	2 cut(s)	44, 115
BmeRI	GACNNNNNGTC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	44, 115
BpmI	CTGGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	493, 536
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	38
BseGI	GGATG	2 cut(s)	52, 490
BseJI	GATNNNNATC	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	493, 536
BseRI	GAGGAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	115, 235
BslFI	GGGAC	2 cut(s)	364, 532
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	364, 532
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	35, 39, 430, 610
BspACI	CCGC	5 cut(s)	5, 72, 75, 78, 227
BspANI	GGCC	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	38
BspPI	GGATC	2 cut(s)	34, 605
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	493, 536
BssMI	GATC	4 cut(s)	35, 39, 430, 610
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	324, 550
BstF5I	GGATG	2 cut(s)	52, 490
BstKTI	GATC	4 cut(s)	38, 42, 433, 613
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	4 cut(s)	35, 39, 430, 610
BstMCI	CGRYCG	1 cut(s)	433
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 77, 86, 305
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	42, 113
BstSFI	CTRYAG	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	118
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	52, 490
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	2 cut(s)	22, 574
ClaI	ATCGAT	1 cut(s)	38
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	170, 253
CviJI	RGCY	6 cut(s)	89, 118, 285, 353, 412, 635
CviKI_1	RGCY	6 cut(s)	89, 118, 285, 353, 412, 635
DdeI	CTNAG	2 cut(s)	324, 550
DpnI	GATC	4 cut(s)	37, 41, 432, 612
DpnII	GATC	4 cut(s)	35, 39, 430, 610
DriI	GACNNNNNGTC	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	493
EciI	GGCGGA	2 cut(s)	20, 242
Eco32I	GATATC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	2 cut(s)	173, 256
FaiI	YATR	9 cut(s)	101, 171, 246, 254, 294, 474, 598, 600, 669
FaqI	GGGAC	2 cut(s)	364, 532
FatI	CATG	2 cut(s)	169, 252
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	72, 75, 78
FokI	GGATG	2 cut(s)	59, 497
Fsp4HI	GCNGC	3 cut(s)	72, 75, 78
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	3 cut(s)	72, 75, 78
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	2 cut(s)	115, 235
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	173, 256
HinfI	GANTC	5 cut(s)	8, 107, 238, 276, 377
HpaII	CCGG	2 cut(s)	115, 235
HphI	GGTGA	2 cut(s)	412, 490
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	58, 357, 366, 660
Hpy188III	TCNNGA	3 cut(s)	94, 460, 608
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	4 cut(s)	62, 65, 68, 71
HpyAV	CCTTC	4 cut(s)	100, 475, 502, 549
HpyCH4V	TGCA	3 cut(s)	20, 299, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 77, 86, 305
HpyF3I	CTNAG	2 cut(s)	324, 550
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	173, 256
Kzo9I	GATC	4 cut(s)	35, 39, 430, 610
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	4 cut(s)	37, 41, 432, 612
MboI	GATC	4 cut(s)	35, 39, 430, 610
MboII	GAAGA	1 cut(s)	571
MluCI	AATT	4 cut(s)	125, 155, 592, 672
MlyI	GAGTC	3 cut(s)	2, 101, 386
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	18, 181, 199, 343, 469, 624
MseI	TTAA	3 cut(s)	129, 447, 591
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	2 cut(s)	115, 235
MspR9I	CCNGG	2 cut(s)	44, 115
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	26, 77, 86, 305
NciI	CCSGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	4 cut(s)	35, 39, 430, 610
NlaIII	CATG	2 cut(s)	173, 256
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	238, 276
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	73, 76, 79
Ple19I	CGATCG	1 cut(s)	433
PleI	GAGTC	3 cut(s)	2, 101, 385
PpsI	GAGTC	3 cut(s)	2, 101, 385
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	129, 447, 591
SatI	GCNGC	3 cut(s)	72, 75, 78
Sau3AI	GATC	4 cut(s)	35, 39, 430, 610
SchI	GAGTC	3 cut(s)	2, 101, 386
ScrFI	CCNGG	2 cut(s)	44, 115
SetI	ASST	7 cut(s)	198, 287, 414, 425, 459, 480, 637
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	4 cut(s)	125, 155, 592, 672
SsiI	CCGC	5 cut(s)	5, 72, 75, 78, 227
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	42, 113
TaqI	TCGA	4 cut(s)	38, 141, 375, 609
TasI	AATT	4 cut(s)	125, 155, 592, 672
TauI	GCSGC	3 cut(s)	74, 77, 80
TfiI	GAWTC	2 cut(s)	238, 276
Tru1I	TTAA	3 cut(s)	129, 447, 591
Tru9I	TTAA	3 cut(s)	129, 447, 591
TscAI	CASTG	2 cut(s)	22, 574
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	116, 492, 585, 654
TspRI	CASTG	2 cut(s)	22, 574
Tth111I	GACNNNGTC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.