Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501171.1

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2210

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501171.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 869 bp

tgatttttgtgtctcagggaggagagaatgtggcgagtttgaagcggcagttagggcagctgtttgaagtttcgattagggcagtggtgcctgatgagctgaatgtggagccggtggttgttccttcggctgggaaattcggagactatcaatgtaacaatgccatggacatatggtctaagattaagggaaagggaactcaattcaagaatcctaattctgttggacaggccatcatgggaaatcttcctaaatcagaaataatagagtcatgcacggtagcagggcctgggtttgttaatattgtgttgtcaaagaattggatggctaagagcttacaaaagatgcttattgatgggatcgaaacatgggcaccacatctccaggtcagacgggctgttgtagacttttcctcacctaatattgccaaggagatgcatgttggccatttgcgatctacaattatcggggacaccctagcccggatgcttgagttttccaaagttgaagttcttcggcgtaatcatgttggtgactggggaacacagtttggcatgttgattcaataccttttcgaaaagtttccaaacgtggatgatgtaaatgaaatggaaatcggtgatcttcaggaattctataagcaatcaaaaaagagatttgatgaggatccggccttcaaggagagagcacaagctgcagtggtatcccttcagggtgggactcccaagtaccgtgaggcatggcttcaaatctgtgaagtcagccgtagagagtttcaaatggtctatgaacggcttggaactcatttagaggaaaaggtttgtttcagatttctgactttacagtttactttgacgtgtagcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

288

Amino Acids

32.63

Weight (kDa)

7.12

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	87, 372
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	3 cut(s)	367, 661, 674
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	136, 631
AcuI	CTGAAG	2 cut(s)	610, 694
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	2 cut(s)	130, 482
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	8 cut(s)	42, 67, 207, 508, 565, 678, 748, 778
AhdI	GACNNNNNGTC	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	2 cut(s)	288, 383
AluBI	AGCT	5 cut(s)	60, 99, 335, 694, 863
AluI	AGCT	5 cut(s)	60, 99, 335, 694, 863
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	2 cut(s)	17, 137
AlwI	GGATC	3 cut(s)	367, 661, 674
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	4 cut(s)	230, 286, 444, 671
ApeKI	GCWGC	2 cut(s)	57, 694
ApoI	RAATTY	2 cut(s)	136, 631
Asp700I	GAANNNNTTC	2 cut(s)	512, 581
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	3 cut(s)	407, 544, 631
AsuII	TTCGAA	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	666
BanI	GGYRCC	2 cut(s)	87, 372
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	2 cut(s)	69, 681
BccI	CCATC	3 cut(s)	241, 318, 349
BceAI	ACGGC	2 cut(s)	749, 808
BciT130I	CCWGG	2 cut(s)	290, 385
BciVI	GTATCC	1 cut(s)	714
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	17, 137
BfaI	CTAG	1 cut(s)	478
BfmI	CTRYAG	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	714
BisI	GCNGC	3 cut(s)	46, 58, 695
BlsI	GCNGC	3 cut(s)	47, 59, 696
Bme1390I	CCNGG	3 cut(s)	290, 385, 483
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmgBI	CACGTC	1 cut(s)	857
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	4 cut(s)	89, 110, 374, 668
BmrFI	CCNGG	3 cut(s)	290, 385, 483
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	335, 425, 476
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	367
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	164, 289, 428
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 482
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	541
Bse8I	GATNNNNATC	1 cut(s)	665
BseBI	CCWGG	2 cut(s)	290, 385
BseDI	CCNNGG	3 cut(s)	164, 289, 428
BseGI	GGATG	3 cut(s)	329, 491, 600
BseJI	GATNNNNATC	1 cut(s)	665
BseLI	CCNNNNNNNGG	2 cut(s)	130, 482
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	69, 681
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	4 cut(s)	232, 288, 446, 673
BshNI	GGYRCC	2 cut(s)	87, 372
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	3 cut(s)	112, 483, 670
BslFI	GGGAC	2 cut(s)	484, 732
BslI	CCNNNNNNNGG	2 cut(s)	130, 482
BsmAI	GTCTC	2 cut(s)	17, 137
BsmFI	GGGAC	2 cut(s)	484, 732
BsnI	GGCC	4 cut(s)	232, 288, 446, 673
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	375, 690
Bsp143I	GATC	4 cut(s)	359, 454, 621, 666
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	4 cut(s)	232, 288, 446, 673
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	89, 110, 374, 668
BspMAI	CTGCAG	1 cut(s)	699
BspPI	GGATC	3 cut(s)	367, 661, 674
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	2 cut(s)	87, 372
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	3 cut(s)	164, 289, 428
BssMI	GATC	4 cut(s)	359, 454, 621, 666
BssT1I	CCWWGG	2 cut(s)	164, 428
Bst2UI	CCWGG	2 cut(s)	290, 385
Bst4CI	ACNGT	4 cut(s)	279, 548, 733, 845
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	14, 179, 329
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	329, 491, 600
BstKTI	GATC	4 cut(s)	362, 457, 624, 669
BstMAI	GTCTC	2 cut(s)	17, 137
BstMBI	GATC	4 cut(s)	359, 454, 621, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 96, 694
BstNI	CCWGG	2 cut(s)	290, 385
BstNSI	RCATGY	2 cut(s)	442, 558
BstSCI	CCNGG	3 cut(s)	288, 383, 481
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	69, 681
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	4 cut(s)	232, 288, 446, 673
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	3 cut(s)	329, 491, 600
BtsI	GCAGTG	2 cut(s)	89, 704
BtsIMutI	CAGTG	2 cut(s)	89, 704
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	8 cut(s)	165, 237, 272, 368, 439, 526, 555, 740
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	3 cut(s)	14, 179, 329
DpnI	GATC	4 cut(s)	361, 456, 623, 668
DpnII	GATC	4 cut(s)	359, 454, 621, 666
DriI	GACNNNNNGTC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	444
Eam1105I	GACNNNNNGTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	164, 428
Eco57I	CTGAAG	2 cut(s)	610, 694
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	631
EcoRII	CCWGG	2 cut(s)	288, 383
EcoT14I	CCWWGG	2 cut(s)	164, 428
EcoT22I	ATGCAT	1 cut(s)	440
ErhI	CCWWGG	2 cut(s)	164, 428
FaeI	CATG	8 cut(s)	168, 240, 275, 371, 442, 529, 558, 743
FaqI	GGGAC	2 cut(s)	484, 732
FatI	CATG	8 cut(s)	164, 236, 271, 367, 438, 525, 554, 739
FauNDI	CATATG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	3 cut(s)	46, 58, 695
FokI	GGATG	3 cut(s)	336, 498, 607
Fsp4HI	GCNGC	3 cut(s)	46, 58, 695
FspBI	CTAG	1 cut(s)	478
GluI	GCNGC	3 cut(s)	46, 58, 695
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	232, 288, 446, 673
HapII	CCGG	3 cut(s)	112, 483, 670
Hin1II	CATG	8 cut(s)	168, 240, 275, 371, 442, 529, 558, 743
HinfI	GANTC	4 cut(s)	210, 268, 561, 720
HpaII	CCGG	3 cut(s)	112, 483, 670
HphI	GGTGA	3 cut(s)	407, 544, 631
Hpy166II	GTNNAC	2 cut(s)	405, 848
Hpy188I	TCNGA	5 cut(s)	142, 258, 391, 829, 836
Hpy188III	TCNNGA	2 cut(s)	207, 628
Hpy8I	GTNNAC	2 cut(s)	405, 848
HpyAV	CCTTC	3 cut(s)	134, 684, 718
HpyCH4III	ACNGT	4 cut(s)	279, 548, 733, 845
HpyCH4IV	ACGT	2 cut(s)	590, 856
HpyCH4V	TGCA	3 cut(s)	275, 438, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 96, 694
HpyF3I	CTNAG	3 cut(s)	14, 179, 329
HpySE526I	ACGT	2 cut(s)	590, 856
Hsp92II	CATG	8 cut(s)	168, 240, 275, 371, 442, 529, 558, 743
Kzo9I	GATC	4 cut(s)	359, 454, 621, 666
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	2 cut(s)	69, 681
LweI	GCATC	3 cut(s)	335, 425, 476
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	2 cut(s)	590, 856
MaeIII	GTNAC	2 cut(s)	154, 532
MalI	GATC	4 cut(s)	361, 456, 623, 668
MboI	GATC	4 cut(s)	359, 454, 621, 666
MboII	GAAGA	3 cut(s)	238, 505, 616
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	2 cut(s)	375, 690
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	6 cut(s)	136, 202, 216, 318, 461, 631
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	277, 714
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	13, 423, 657, 729, 804
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	440
MroXI	GAANNNNTTC	2 cut(s)	512, 581
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	2 cut(s)	185, 299
MslI	CAYNNNNRTG	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	3 cut(s)	112, 483, 670
MspR9I	CCNGG	3 cut(s)	290, 385, 483
MvaI	CCWGG	2 cut(s)	290, 385
MwoI	GCNNNNNNNGC	3 cut(s)	54, 96, 694
NciI	CCSGG	1 cut(s)	483
NcoI	CCATGG	1 cut(s)	164
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	4 cut(s)	359, 454, 621, 666
NlaIII	CATG	8 cut(s)	168, 240, 275, 371, 442, 529, 558, 743
NlaIV	GGNNCC	4 cut(s)	89, 110, 374, 668
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	440
NspI	RCATGY	2 cut(s)	442, 558
NspV	TTCGAA	1 cut(s)	575
PdmI	GAANNNNTTC	2 cut(s)	512, 581
PfeI	GAWTC	2 cut(s)	210, 561
PkrI	GCNGC	3 cut(s)	47, 59, 696
PleI	GAGTC	2 cut(s)	276, 714
PpsI	GAGTC	2 cut(s)	276, 714
Psp6I	CCWGG	2 cut(s)	288, 383
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	288, 383
PspN4I	GGNNCC	4 cut(s)	89, 110, 374, 668
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	666
PvuII	CAGCTG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	185, 299
SatI	GCNGC	3 cut(s)	46, 58, 695
Sau3AI	GATC	4 cut(s)	359, 454, 621, 666
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	277, 714
ScrFI	CCNGG	3 cut(s)	290, 385, 483
SduI	GDGCHC	2 cut(s)	375, 690
SfaNI	GCATC	3 cut(s)	335, 425, 476
SfcI	CTRYAG	1 cut(s)	695
SfuI	TTCGAA	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	6 cut(s)	136, 202, 216, 318, 461, 631
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	2 cut(s)	303, 423
SspMI	CTAG	1 cut(s)	478
StyD4I	CCNGG	3 cut(s)	288, 383, 481
StyI	CCWWGG	2 cut(s)	164, 428
TaaI	ACNGT	4 cut(s)	279, 548, 733, 845
TaiI	ACGT	2 cut(s)	593, 859
TaqI	TCGA	3 cut(s)	73, 362, 575
TasI	AATT	6 cut(s)	136, 202, 216, 318, 461, 631
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	210, 561
Tru1I	TTAA	2 cut(s)	185, 299
Tru9I	TTAA	2 cut(s)	185, 299
TscAI	CASTG	2 cut(s)	89, 704
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	57, 694
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	620, 803
TspRI	CASTG	2 cut(s)	89, 704
XapI	RAATTY	2 cut(s)	136, 631
XceI	RCATGY	2 cut(s)	442, 558
XmiI	GTMKAC	1 cut(s)	404
XmnI	GAANNNNTTC	2 cut(s)	512, 581
XspI	CTAG	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.