Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

1830729 .. 1834331

Gene Structure 3603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0023100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGTCGAGTAACGGAAACCTCAACGGCGCGGACGACCCGGAGTCAATCACGGCGCCGTTACTTTCCGGCCGCCGATTCGTCCTCAACAACCACACCTCTCAGGTGGCCCTCGTCGGCGCCAATGTGTCCCCAATCGAGAGCCTCGACTACGAGATTTTGGAGAACGAGTTCTTCAAGCAGGACTGGCGCAGCCGCGAGACGGTCCACGTCTTCCAGTACATCTTCATGAAGTGGTTCACCTGTTTCCTCGTCGGAATTATCGTCGGGATGATCGGTTTCTGCAATAACCTCGCCGTCGAGAACATCGCCGGCGTCAAGTTCGTCATCACCTCCAACATGATGCTGGAGCAGAGGTTTTGGCTGGCGTTTGTTGTCTTCTTCTCTTATAACTTGGCGCTCACTCTGTTTGCGTCTACTATCACTTCTTTAGTGGCGCCGGCGGCCGCCGGCTCCGGCATACCGGAGGTGAAGGCTTACCTTAATGGAGTGGACGCTCCGGGGATTTTTTCAATTCGGACTTTGATCGTAAAGATAGTTGGCAGTATTACTGCCGTGTCATCGTCTCTTTTAATTGGGAAGGCAGGGCCGATGGTGCATACCGGTGCATGTGTTGCATCATTGTTGGGACAGGGTGGATCAAAGAAGTATGGTTTGACATGGAAGTGGCTACGATACTTCAAGAATGATCGAGACCGTAGGGATCTTGTGACTTGTGGATCAGCTGCTGGAATCGCTGCCTCTTTCCGTTCACCTGTTGGTGGTCTGCTCTTTGCTCTTGAAGAGATGGCATCCTGGTGGCGAGGAGCCCTTTTGTGGAGAGCTTTTTTCACAACAGCTGTAATTGCGATTGTGCTCCGAGCTTGGATTGATTTTTGCTTGAGTGGAAAATGTGGGCTATTTGGTACCGGAGGCCTGATAATGTTTGACGTATATTCATCGAATATGTCTTATCACCTAACAGATGTGCCTCCTGTGCTAGTCCTGGCATTTGTAGGTGGCATATTGGGGAGCTTCTACAATTATCTATTAACAAAAGTTCTCCGAATTTACAATCTCATCCACGAGAAAGGCATCTTTTATAAAGTTCTTCTTGCTTCCTCAATTTCCATTTTCACATCTTGTCTTCTCTTTGGATTGCCATGGCTTGCATCTTGCCGACCTTGCCCACCTGATGCATCAGAGGCCTGTCCTACAATTGGAAGGTCGGGTAACTACAAGAAGTTCCAATGTCCTCCTGGTCACTATAATGACCTTGCCAGCCTCATATTTAACACAAATGATGATGCTATCAGAAATCTTTTCAGCAAGGACACTGATACCGAGTTTCAATACTCCTCAGTTCTCATATTTTTAATCTCCTGCTTTTTCTTAAGCATCTTTAGCTATGGGGTTGTTGTTCCTGCTGGTTTGTTTGTACCTGTTATTGTGACTGGTGCATCATATGGCCGCTTTGTTGGAATGTTGTTGGGTTCATACACAGATCTCAATCATGGCCTTTTTGCTGTGCTGGGGGCTGCTTCTTTACTTGGTGGAACCATGAGGATGACCGTGTCTTTGTGTGTAATTATTCTGGAGCTGACCAATAATCTGTTGTTGCTACCATTGATAATGATAGTTCTTCTTGTTTCCAAGACCACAGCAGATGCTTTCAATGGCAACATATACAATCTTATTATGAAAGCAAAGGGTCTTCCATATTTAAAGGGTCATGCTGAACCATATATGAGGCAGCTGACAGTAAGTGACGTAGTGACGGGGCCACTTCAACTCTTTAATGGCATTGAGAAAGTTGGTAATATAGTACATGTTCTCAGAACTACAGGGCATAATGGTTTCCCTGTAATTGATGAGTCTCCACCACCTGAACCTCCTGTTTTGTTTGGTTTGGTCCTCCGTGCCCATCTTATTGAATTGTTGAAGAAGAAATCTTTTGTGTCTACTCCAGTGCGGACGACTACTGATGCCTTCAGACAGTTTTCGTCGGAGGATTTTGCAAAGAGGGGTTCAGGCAATGGTGACAAGATAGAAGACATAGAACTGACTGAGGAGGAGATGGAAATGTACATAGACTTGCATCCATTTACTAATGCTTCACCTTATACTGTTGTGGAGACAATGTCATTAGCAAAGGCTCTCATACTTTTCCGACAAGTTGGTTTGAGGCACCTTCTAGTGATACCAAAGATGTCCTGTAGATCTCCTATAGTGGGCATACTGACAAGGCACGACTTCATGCCAGAACATATATTCCGCTTGCACCCTACGCTGGTAAGTAGCAGGTGGAAAAGATTAAGACTCCGGCTGCCCGTTCGAGAAAAATCTTTTAGGCTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

778

Amino Acids

85.85

Weight (kDa)

8.89

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	134 - 547	2.7e-79	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	387, 1080
AarI	CACCTGC	1 cut(s)	2268
Acc36I	ACCTGC	1 cut(s)	2268
Acc65I	GGTACC	1 cut(s)	902
AccB1I	GGYRCC	5 cut(s)	52, 116, 433, 902, 2163
AccI	GTMKAC	2 cut(s)	413, 1937
AccII	CGCG	2 cut(s)	29, 195
AciI	CCGC	8 cut(s)	29, 70, 193, 440, 444, 1447, 1948, 2251
AclWI	GGATC	3 cut(s)	643, 708, 724
AcoI	YGGCCR	3 cut(s)	67, 441, 1444
AcsI	RAATTY	1 cut(s)	1044
AcuI	CTGAAG	1 cut(s)	1951
AcyI	GRCGYC	4 cut(s)	53, 117, 312, 434
AfaI	GTAC	5 cut(s)	218, 904, 1416, 1803, 2063
AfiI	CCNNNNNNNGG	6 cut(s)	199, 758, 813, 1196, 2207, 2266
AflII	CTTAAG	1 cut(s)	1369
AflIII	ACRYGT	1 cut(s)	1804
AgeI	ACCGGT	1 cut(s)	599
AgsI	TTSAA	9 cut(s)	175, 510, 679, 779, 1328, 1651, 1766, 1910, 1918
AhdI	GACNNNNNGTC	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	791, 981, 1234
AloI	GAACNNNNNNTCC	4 cut(s)	152, 184, 2232, 2264
AluBI	AGCT	8 cut(s)	722, 821, 836, 860, 1011, 1383, 1576, 1732
AluI	AGCT	8 cut(s)	722, 821, 836, 860, 1011, 1383, 1576, 1732
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	5 cut(s)	191, 567, 684, 1857, 2105
AlwI	GGATC	3 cut(s)	643, 708, 724
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	9 cut(s)	67, 105, 441, 584, 910, 1182, 1444, 1492, 1757
ApeKI	GCWGC	6 cut(s)	189, 722, 734, 1514, 1729, 2302
ApoI	RAATTY	1 cut(s)	1044
ArsI	GACNNNNNNTTYG	2 cut(s)	1537, 1569
AsiGI	ACCGGT	1 cut(s)	599
Asp700I	GAANNNNTTC	2 cut(s)	167, 233
Asp718I	GGTACC	1 cut(s)	902
AspLEI	GCGC	6 cut(s)	29, 55, 119, 189, 397, 436
AspS9I	GGNCC	5 cut(s)	106, 202, 584, 1757, 1888
AsuC2I	CCSGG	2 cut(s)	38, 498
AsuHPI	GGTGA	7 cut(s)	229, 319, 478, 741, 944, 2027, 2085
AvaII	GGWCC	2 cut(s)	202, 1888
BaeGI	GKGCMC	1 cut(s)	1900
BanI	GGYRCC	5 cut(s)	52, 116, 433, 902, 2163
BanII	GRGCYC	1 cut(s)	808
BauI	CACGAG	1 cut(s)	1061
BbsI	GAAGAC	5 cut(s)	202, 367, 1115, 1682, 2034
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	6 cut(s)	201, 709, 721, 1501, 1741, 2289
BccI	CCATC	4 cut(s)	583, 778, 1908, 2047
BceAI	ACGGC	5 cut(s)	40, 40, 66, 278, 536
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	3 cut(s)	793, 983, 1236
BcnI	CCSGG	2 cut(s)	38, 498
BcoDI	GTCTC	5 cut(s)	191, 567, 684, 1857, 2105
BfaI	CTAG	2 cut(s)	977, 2171
BfmI	CTRYAG	3 cut(s)	1818, 2191, 2202
BfoI	RGCGCY	4 cut(s)	56, 120, 398, 437
BfrI	CTTAAG	1 cut(s)	1369
BfuAI	ACCTGC	1 cut(s)	2268
BglII	AGATCT	2 cut(s)	1480, 2195
Bme1390I	CCNGG	5 cut(s)	38, 498, 793, 983, 1236
Bme18I	GGWCC	2 cut(s)	202, 1888
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	5 cut(s)	106, 202, 584, 1757, 1888
BmiI	GGNNCC	9 cut(s)	54, 118, 435, 451, 805, 904, 1534, 1758, 2165
BmrFI	CCNGG	5 cut(s)	38, 498, 793, 983, 1236
BpiI	GAAGAC	5 cut(s)	202, 367, 1115, 1682, 2034
BpmI	CTGGAG	3 cut(s)	365, 1592, 1926
BpuEI	CTTGAG	1 cut(s)	898
BpuMI	CCSGG	2 cut(s)	38, 498
BsaBI	GATNNNNATC	1 cut(s)	1485
BsaHI	GRCGYC	4 cut(s)	53, 117, 312, 434
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	497, 1139
BsaWI	WCCGGW	3 cut(s)	460, 599, 905
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 338, 368, 2102, 2132
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 758, 813, 1196, 2207, 2266
Bse118I	RCCGGY	4 cut(s)	308, 436, 446, 599
Bse1I	ACTGG	4 cut(s)	188, 214, 1435, 1943
Bse3DI	GCAATG	1 cut(s)	2017
Bse8I	GATNNNNATC	1 cut(s)	1485
BseBI	CCWGG	3 cut(s)	793, 983, 1236
BseDI	CCNNGG	2 cut(s)	497, 1139
BseGI	GGATG	5 cut(s)	273, 788, 1056, 1548, 2074
BseJI	GATNNNNATC	1 cut(s)	1485
BseLI	CCNNNNNNNGG	6 cut(s)	199, 758, 813, 1196, 2207, 2266
BseMI	GCAATG	1 cut(s)	2017
BseMII	CTCAG	4 cut(s)	113, 1350, 1825, 2034
BseNI	ACTGG	4 cut(s)	188, 214, 1435, 1943
BseRI	GAGGAG	4 cut(s)	816, 1324, 2060, 2063
BseSI	GKGCMC	1 cut(s)	1900
BseX3I	CGGCCG	2 cut(s)	67, 441
BseXI	GCAGC	6 cut(s)	201, 709, 721, 1501, 1741, 2289
BseYI	CCCAGC	1 cut(s)	1507
Bsh1236I	CGCG	2 cut(s)	29, 195
Bsh1285I	CGRYCG	2 cut(s)	70, 444
BshFI	GGCC	9 cut(s)	69, 107, 443, 586, 912, 1184, 1446, 1494, 1759
BshNI	GGYRCC	5 cut(s)	52, 116, 433, 902, 2163
BshTI	ACCGGT	1 cut(s)	599
BsiEI	CGRYCG	2 cut(s)	70, 444
BsiHKAI	GWGCWC	1 cut(s)	855
BslFI	GGGAC	2 cut(s)	112, 639
BslI	CCNNNNNNNGG	6 cut(s)	199, 758, 813, 1196, 2207, 2266
BsmAI	GTCTC	5 cut(s)	191, 567, 684, 1857, 2105
BsmBI	CGTCTC	2 cut(s)	191, 567
BsmFI	GGGAC	2 cut(s)	112, 639
BsnI	GGCC	9 cut(s)	69, 107, 443, 586, 912, 1184, 1446, 1494, 1759
Bso31I	GGTCTC	1 cut(s)	684
Bsp1286I	GDGCHC	3 cut(s)	808, 855, 1900
Bsp1407I	TGTACA	1 cut(s)	2061
Bsp143I	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
Bsp19I	CCATGG	1 cut(s)	1139
BspACI	CCGC	8 cut(s)	29, 70, 193, 440, 444, 1447, 1948, 2251
BspANI	GGCC	9 cut(s)	69, 107, 443, 586, 912, 1184, 1446, 1494, 1759
BspCNI	CTCAG	4 cut(s)	112, 1349, 1824, 2035
BspFNI	CGCG	2 cut(s)	29, 195
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	9 cut(s)	54, 118, 435, 451, 805, 904, 1534, 1758, 2165
BspMI	ACCTGC	1 cut(s)	2268
BspPI	GGATC	3 cut(s)	643, 708, 724
BspT107I	GGYRCC	5 cut(s)	52, 116, 433, 902, 2163
BspTI	CTTAAG	1 cut(s)	1369
BspTNI	GGTCTC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	2017
BsrFI	RCCGGY	4 cut(s)	308, 436, 446, 599
BsrGI	TGTACA	1 cut(s)	2061
BsrI	ACTGG	4 cut(s)	188, 214, 1435, 1943
BssAI	RCCGGY	4 cut(s)	308, 436, 446, 599
BssECI	CCNNGG	2 cut(s)	497, 1139
BssMI	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
BssNI	GRCGYC	4 cut(s)	53, 117, 312, 434
BssSI	CACGAG	1 cut(s)	1061
BssT1I	CCWWGG	1 cut(s)	1139
Bst2BI	CACGAG	1 cut(s)	1061
Bst2UI	CCWGG	3 cut(s)	793, 983, 1236
Bst4CI	ACNGT	6 cut(s)	202, 695, 1549, 1738, 1974, 2104
Bst6I	CTCTTC	1 cut(s)	774
BstACI	GRCGYC	4 cut(s)	53, 117, 312, 434
BstAFI	CTTAAG	1 cut(s)	1369
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	2061
BstC8I	GCNNGC	7 cut(s)	310, 363, 438, 448, 1146, 1258, 2255
BstDEI	CTNAG	5 cut(s)	99, 1336, 1811, 2043, 2334
BstDSI	CCRYGG	1 cut(s)	1139
BstF5I	GGATG	5 cut(s)	273, 788, 1056, 1548, 2074
BstFNI	CGCG	2 cut(s)	29, 195
BstH2I	RGCGCY	4 cut(s)	56, 120, 398, 437
BstHHI	GCGC	6 cut(s)	29, 55, 119, 189, 397, 436
BstKTI	GATC	8 cut(s)	273, 525, 638, 688, 703, 719, 1483, 2198
BstMAI	GTCTC	5 cut(s)	191, 567, 684, 1857, 2105
BstMBI	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
BstMCI	CGRYCG	2 cut(s)	70, 444
BstNI	CCWGG	3 cut(s)	793, 983, 1236
BstNSI	RCATGY	2 cut(s)	609, 1808
BstSCI	CCNGG	5 cut(s)	36, 496, 791, 981, 1234
BstSFI	CTRYAG	3 cut(s)	1818, 2191, 2202
BstSLI	GKGCMC	1 cut(s)	1900
BstUI	CGCG	2 cut(s)	29, 195
BstV1I	GCAGC	6 cut(s)	201, 709, 721, 1501, 1741, 2289
BstV2I	GAAGAC	5 cut(s)	202, 367, 1115, 1682, 2034
BstX2I	RGATCY	3 cut(s)	700, 1480, 2195
BstYI	RGATCY	3 cut(s)	700, 1480, 2195
BstZI	CGGCCG	2 cut(s)	67, 441
BsuRI	GGCC	9 cut(s)	69, 107, 443, 586, 912, 1184, 1446, 1494, 1759
BtgI	CCRYGG	1 cut(s)	1139
BtgZI	GCGATG	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	5 cut(s)	273, 788, 1056, 1548, 2074
BtsIMutI	CAGTG	2 cut(s)	1311, 1950
BveI	ACCTGC	1 cut(s)	2268
Cac8I	GCNNGC	7 cut(s)	310, 363, 438, 448, 1146, 1258, 2255
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	225
CciNI	GCGGCCGC	1 cut(s)	441
CfoI	GCGC	6 cut(s)	29, 55, 119, 189, 397, 436
Cfr10I	RCCGGY	4 cut(s)	308, 436, 446, 599
Cfr13I	GGNCC	5 cut(s)	106, 202, 584, 1757, 1888
CseI	GACGC	3 cut(s)	301, 399, 500
Csp6I	GTAC	5 cut(s)	217, 903, 1415, 1802, 2062
CspAI	ACCGGT	1 cut(s)	599
CviQI	GTAC	5 cut(s)	217, 903, 1415, 1802, 2062
DdeI	CTNAG	5 cut(s)	99, 1336, 1811, 2043, 2334
DinI	GGCGCC	3 cut(s)	54, 118, 435
DpnI	GATC	8 cut(s)	272, 524, 637, 687, 702, 718, 1482, 2197
DpnII	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
DraI	TTTAAA	1 cut(s)	1701
DriI	GACNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	3 cut(s)	67, 441, 1444
EagI	CGGCCG	2 cut(s)	67, 441
Eam1104I	CTCTTC	1 cut(s)	774
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	774
EclXI	CGGCCG	2 cut(s)	67, 441
Eco130I	CCWWGG	1 cut(s)	1139
Eco147I	AGGCCT	2 cut(s)	912, 1184
Eco24I	GRGCYC	1 cut(s)	808
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	202, 1888
Eco52I	CGGCCG	2 cut(s)	67, 441
Eco57I	CTGAAG	1 cut(s)	1951
EcoRII	CCWGG	3 cut(s)	791, 981, 1234
EcoT14I	CCWWGG	1 cut(s)	1139
EcoT22I	ATGCAT	1 cut(s)	1177
EcoT38I	GRGCYC	1 cut(s)	808
EgeI	GGCGCC	3 cut(s)	54, 118, 435
EheI	GGCGCC	3 cut(s)	54, 118, 435
ErhI	CCWWGG	1 cut(s)	1139
Esp3I	CGTCTC	2 cut(s)	191, 567
FalI	AAGNNNNNCTT	2 cut(s)	1074, 1106
FaqI	GGGAC	2 cut(s)	112, 639
FauNDI	CATATG	1 cut(s)	1441
FblI	GTMKAC	2 cut(s)	413, 1937
FokI	GGATG	5 cut(s)	280, 775, 1043, 1555, 2061
FriOI	GRGCYC	1 cut(s)	808
FspBI	CTAG	2 cut(s)	977, 2171
GlaI	GCGC	6 cut(s)	28, 54, 118, 188, 396, 435
GsaI	CCCAGC	1 cut(s)	1511
GsuI	CTGGAG	3 cut(s)	365, 1592, 1926
HaeII	RGCGCY	4 cut(s)	56, 120, 398, 437
HaeIII	GGCC	9 cut(s)	69, 107, 443, 586, 912, 1184, 1446, 1494, 1759
HgaI	GACGC	3 cut(s)	301, 399, 500
HhaI	GCGC	6 cut(s)	29, 55, 119, 189, 397, 436
Hin1I	GRCGYC	4 cut(s)	53, 117, 312, 434
Hin6I	GCGC	6 cut(s)	27, 53, 117, 187, 395, 434
HinP1I	GCGC	6 cut(s)	27, 53, 117, 187, 395, 434
HinfI	GANTC	5 cut(s)	41, 75, 729, 1850, 2295
HphI	GGTGA	7 cut(s)	229, 319, 478, 741, 944, 2027, 2085
Hpy166II	GTNNAC	6 cut(s)	205, 237, 414, 490, 749, 1938
Hpy188III	TCNNGA	9 cut(s)	136, 226, 265, 298, 679, 689, 776, 1571, 2312
Hpy8I	GTNNAC	6 cut(s)	205, 237, 414, 490, 749, 1938
Hpy99I	CGWCG	5 cut(s)	116, 254, 266, 299, 1984
HpyAV	CCTTC	5 cut(s)	463, 571, 1194, 1975, 2177
HpyCH4III	ACNGT	6 cut(s)	202, 695, 1549, 1738, 1974, 2104
HpyCH4IV	ACGT	3 cut(s)	207, 927, 1746
HpyF3I	CTNAG	5 cut(s)	99, 1336, 1811, 2043, 2334
HpySE526I	ACGT	3 cut(s)	207, 927, 1746
Hsp92I	GRCGYC	4 cut(s)	53, 117, 312, 434
HspAI	GCGC	6 cut(s)	27, 53, 117, 187, 395, 434
KasI	GGCGCC	3 cut(s)	52, 116, 433
KpnI	GGTACC	1 cut(s)	906
KroI	GCCGGC	3 cut(s)	308, 436, 446
KroNI	GCCGGC	3 cut(s)	310, 438, 448
Kzo9I	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
LmnI	GCTCC	7 cut(s)	346, 455, 499, 803, 858, 1008, 1573
Lsp1109I	GCAGC	6 cut(s)	201, 709, 721, 1501, 1741, 2289
MaeI	CTAG	2 cut(s)	977, 2171
MaeII	ACGT	3 cut(s)	207, 927, 1746
MaeIII	GTNAC	9 cut(s)	8, 57, 706, 1208, 1238, 1426, 1742, 1750, 2015
MalI	GATC	8 cut(s)	272, 524, 637, 687, 702, 718, 1482, 2197
MboI	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	3 cut(s)	700, 1480, 2195
MhlI	GDGCHC	3 cut(s)	808, 855, 1900
Mly113I	GGCGCC	3 cut(s)	53, 117, 434
MlyI	GAGTC	3 cut(s)	50, 1859, 2289
MmeI	TCCRAC	5 cut(s)	232, 357, 1435, 1962, 2170
Mph1103I	ATGCAT	1 cut(s)	1177
MreI	CGCCGGCG	2 cut(s)	308, 436
MroNI	GCCGGC	3 cut(s)	308, 436, 446
MroXI	GAANNNNTTC	2 cut(s)	167, 233
MseI	TTAA	9 cut(s)	480, 569, 1028, 1269, 1352, 1370, 1700, 1773, 2291
MslI	CAYNNNNRTG	6 cut(s)	224, 600, 661, 793, 1245, 1541
MspA1I	CMGCKG	3 cut(s)	722, 836, 1732
MspCI	CTTAAG	1 cut(s)	1369
MspR9I	CCNGG	5 cut(s)	38, 498, 793, 983, 1236
MunI	CAATTG	1 cut(s)	1194
MvaI	CCWGG	3 cut(s)	793, 983, 1236
MvnI	CGCG	2 cut(s)	29, 195
NaeI	GCCGGC	3 cut(s)	310, 438, 448
NarI	GGCGCC	3 cut(s)	53, 117, 434
NciI	CCSGG	2 cut(s)	38, 498
NcoI	CCATGG	1 cut(s)	1139
NdeI	CATATG	1 cut(s)	1441
NdeII	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
NgoMIV	GCCGGC	3 cut(s)	308, 436, 446
NlaIV	GGNNCC	9 cut(s)	54, 118, 435, 451, 805, 904, 1534, 1758, 2165
NmuCI	GTSAC	6 cut(s)	706, 1238, 1426, 1742, 1750, 2015
NotI	GCGGCCGC	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	1177
NspI	RCATGY	2 cut(s)	609, 1808
PagI	TCATGA	1 cut(s)	225
PaqCI	CACCTGC	1 cut(s)	2268
PceI	AGGCCT	2 cut(s)	912, 1184
PciI	ACATGT	1 cut(s)	1804
PcsI	WCGNNNNNNNCGW	3 cut(s)	30, 141, 258
PdiI	GCCGGC	3 cut(s)	310, 438, 448
PdmI	GAANNNNTTC	2 cut(s)	167, 233
PfeI	GAWTC	2 cut(s)	75, 729
PflFI	GACNNNGTC	2 cut(s)	1549, 2116
PinAI	ACCGGT	1 cut(s)	599
PleI	GAGTC	3 cut(s)	49, 1858, 2289
PluTI	GGCGCC	3 cut(s)	56, 120, 437
PpsI	GAGTC	3 cut(s)	49, 1858, 2289
PscI	ACATGT	1 cut(s)	1804
PsiI	TTATAA	2 cut(s)	387, 1080
Psp6I	CCWGG	3 cut(s)	791, 981, 1234
PspFI	CCCAGC	1 cut(s)	1507
PspGI	CCWGG	3 cut(s)	791, 981, 1234
PspN4I	GGNNCC	9 cut(s)	54, 118, 435, 451, 805, 904, 1534, 1758, 2165
PspPI	GGNCC	5 cut(s)	106, 202, 584, 1757, 1888
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	3 cut(s)	700, 1480, 2195
PsyI	GACNNNGTC	2 cut(s)	1549, 2116
PvuII	CAGCTG	3 cut(s)	722, 836, 1732
RsaI	GTAC	5 cut(s)	218, 904, 1416, 1803, 2063
RsaNI	GTAC	5 cut(s)	217, 903, 1415, 1802, 2062
RseI	CAYNNNNRTG	6 cut(s)	224, 600, 661, 793, 1245, 1541
SaqAI	TTAA	9 cut(s)	480, 569, 1028, 1269, 1352, 1370, 1700, 1773, 2291
Sau3AI	GATC	8 cut(s)	270, 522, 635, 685, 700, 716, 1480, 2195
Sau96I	GGNCC	5 cut(s)	106, 202, 584, 1757, 1888
SchI	GAGTC	3 cut(s)	50, 1859, 2289
ScrFI	CCNGG	5 cut(s)	38, 498, 793, 983, 1236
SduI	GDGCHC	3 cut(s)	808, 855, 1900
SfcI	CTRYAG	3 cut(s)	1818, 2191, 2202
SfoI	GGCGCC	3 cut(s)	54, 118, 435
SgrAI	CRCCGGYG	2 cut(s)	308, 436
SinI	GGWCC	2 cut(s)	202, 1888
SmiMI	CAYNNNNRTG	6 cut(s)	224, 600, 661, 793, 1245, 1541
SmlI	CTYRAG	2 cut(s)	877, 1369
SmoI	CTYRAG	2 cut(s)	877, 1369
SseBI	AGGCCT	2 cut(s)	912, 1184
SsiI	CCGC	8 cut(s)	29, 70, 193, 440, 444, 1447, 1948, 2251
SspDI	GGCGCC	3 cut(s)	52, 116, 433
SspMI	CTAG	2 cut(s)	977, 2171
StuI	AGGCCT	2 cut(s)	912, 1184
StyD4I	CCNGG	5 cut(s)	36, 496, 791, 981, 1234
StyI	CCWWGG	1 cut(s)	1139
TaaI	ACNGT	6 cut(s)	202, 695, 1549, 1738, 1974, 2104
TaiI	ACGT	3 cut(s)	210, 930, 1749
TaqI	TCGA	7 cut(s)	5, 135, 144, 297, 688, 938, 2311
TatI	WGTACW	3 cut(s)	216, 1801, 2061
TauI	GCSGC	5 cut(s)	72, 195, 443, 446, 1449
TfiI	GAWTC	2 cut(s)	75, 729
Tru1I	TTAA	9 cut(s)	480, 569, 1028, 1269, 1352, 1370, 1700, 1773, 2291
Tru9I	TTAA	9 cut(s)	480, 569, 1028, 1269, 1352, 1370, 1700, 1773, 2291
TscAI	CASTG	2 cut(s)	1318, 1950
TseFI	GTSAC	6 cut(s)	706, 1238, 1426, 1742, 1750, 2015
TseI	GCWGC	6 cut(s)	189, 722, 734, 1514, 1729, 2302
Tsp45I	GTSAC	6 cut(s)	706, 1238, 1426, 1742, 1750, 2015
TspDTI	ATGAA	6 cut(s)	214, 242, 924, 1461, 1691, 2221
TspGWI	ACGGA	3 cut(s)	27, 734, 1883
TspRI	CASTG	2 cut(s)	1318, 1950
Tth111I	GACNNNGTC	2 cut(s)	1549, 2116
Vha464I	CTTAAG	1 cut(s)	1369
VpaK11BI	GGWCC	2 cut(s)	202, 1888
XapI	RAATTY	1 cut(s)	1044
XceI	RCATGY	2 cut(s)	609, 1808
XcmI	CCANNNNNNNNNTGG	2 cut(s)	340, 1232
XmiI	GTMKAC	2 cut(s)	413, 1937
XmnI	GAANNNNTTC	2 cut(s)	167, 233
XspI	CTAG	2 cut(s)	977, 2171
Zsp2I	ATGCAT	1 cut(s)	1177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.