Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

31114360 .. 31116952

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTCTTTTCCTGGATTACAATATTTGCAGCTCAGTGTGCAGGTTGGCTCCCAGCTGATGAAGGCAGGTCATTATATCCAAAAGCTAGCCATGTTGGTTTTGGTCTTGTTTGTGGAGCAGATGCCAAACCCCTCCTGACTCGCTGCGCCAATGTGGTTAGATTGGTTGATTTACTGGATGAAGCGAAGAACCGCAGCAAAGCAGCTCTAATTGAGCGGGATGAGCTTGAGCGAACTGCAGAGGCTGTTGGTTATGGTGCTGTTAAGTATGCTAACCTGAAGAATAGTAGATGTAGCAAATACAAGTTCGATTTTGATCAGATGCTAAATGATAAGGGAAACACTGCAGTTTACTTGCTCTATGCTCATGCTCGGATCTGTTCTATAATGAGCAAATCTGGCAGAAACATAGAGGAATTGAAAAGAACAGGAGAAATTGTGCTGGATCATGTTGGGGAACGGCAATTGGCGCTTCATTTGCTAAAATTTTCTGAGGCTGTGGAGGAGAGCTGCACCACTCTATTGCCGAATGTTTTGACTGACTACCTCTACAGTTTATCAGAAATCTTCACTAAGTTCTATGGAGACTGCAAGGTTGTTGGGAGTTCACAGGAAACAAGTAGACTGTTGCTTTGTGAAGCAACAGCCTTAGTGATGAGGAAATCATGTTTTAATCTGCTTGGAATCGAACCTGTTAACAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

235

Amino Acids

26.19

Weight (kDa)

7.51

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	29 - 105	5.6e-18	tRNA synthetases class I (R), catalytic domain
DALR_1	PF05746	119 - 235	4.8e-29	DALR anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	32, 57
AccBSI	CCGCTC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	622
AciI	CCGC	2 cut(s)	193, 217
AclWI	GGATC	2 cut(s)	383, 453
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	7 cut(s)	32, 56, 86, 206, 226, 510, 703
AluI	AGCT	7 cut(s)	32, 56, 86, 206, 226, 510, 703
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	383, 453
AlwNI	CAGNNNCTG	1 cut(s)	245
ApeKI	GCWGC	5 cut(s)	29, 144, 195, 203, 510
ApoI	RAATTY	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AspLEI	GCGC	2 cut(s)	149, 472
AsuNHI	GCTAGC	1 cut(s)	86
BbvI	GCAGC	5 cut(s)	41, 131, 207, 215, 497
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	1 cut(s)	13
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	3 cut(s)	237, 345, 550
BfoI	RGCGCY	1 cut(s)	473
BfuAI	ACCTGC	2 cut(s)	32, 57
BisI	GCNGC	5 cut(s)	30, 145, 196, 204, 511
BlsI	GCNGC	5 cut(s)	31, 146, 197, 205, 512
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	112, 312
BmtI	GCTAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bse1I	ACTGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	184, 226
BseJI	GATNNNNATC	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	47, 483
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	5 cut(s)	41, 131, 207, 215, 497
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	2 cut(s)	60, 496
BsmAI	GTCTC	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	316, 375, 445
BspACI	CCGC	2 cut(s)	193, 217
BspCNI	CTCAG	2 cut(s)	46, 484
BspLI	GGNNCC	1 cut(s)	50
BspMAI	CTGCAG	2 cut(s)	241, 349
BspMI	ACCTGC	2 cut(s)	32, 57
BspOI	GCTAGC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	383, 453
BsrBI	CCGCTC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	316, 375, 445
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	554, 627
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	33, 492, 573, 649
BstF5I	GGATG	2 cut(s)	184, 226
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	2 cut(s)	149, 472
BstKTI	GATC	3 cut(s)	319, 378, 448
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	3 cut(s)	316, 375, 445
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 223, 399, 469, 478
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	3 cut(s)	237, 345, 550
BstV1I	GCAGC	5 cut(s)	41, 131, 207, 215, 497
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	184, 226
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	41, 342
BveI	ACCTGC	2 cut(s)	32, 57
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	2 cut(s)	149, 472
CviAII	CATG	4 cut(s)	92, 368, 449, 666
DdeI	CTNAG	4 cut(s)	33, 492, 573, 649
DpnI	GATC	3 cut(s)	318, 377, 447
DpnII	GATC	3 cut(s)	316, 375, 445
Eco57I	CTGAAG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	11
FaeI	CATG	4 cut(s)	95, 371, 452, 669
FatI	CATG	4 cut(s)	91, 367, 448, 665
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	30, 145, 196, 204, 511
FokI	GGATG	2 cut(s)	191, 233
Fsp4HI	GCNGC	5 cut(s)	30, 145, 196, 204, 511
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	2 cut(s)	148, 471
GluI	GCNGC	5 cut(s)	30, 145, 196, 204, 511
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	473
HhaI	GCGC	2 cut(s)	149, 472
Hin1II	CATG	4 cut(s)	95, 371, 452, 669
Hin6I	GCGC	2 cut(s)	147, 470
HinP1I	GCGC	2 cut(s)	147, 470
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	2 cut(s)	139, 684
HpaI	GTTAAC	1 cut(s)	697
Hpy166II	GTNNAC	4 cut(s)	352, 608, 623, 697
Hpy188I	TCNGA	4 cut(s)	321, 375, 493, 562
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	4 cut(s)	352, 608, 623, 697
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	554, 627
HpyCH4V	TGCA	6 cut(s)	29, 41, 239, 347, 513, 591
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 223, 399, 469, 478
HpyF3I	CTNAG	4 cut(s)	33, 492, 573, 649
Hsp92II	CATG	4 cut(s)	95, 371, 452, 669
HspAI	GCGC	2 cut(s)	147, 470
Ksp22I	TGATCA	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	316, 375, 445
LmnI	GCTCC	2 cut(s)	54, 116
Lsp1109I	GCAGC	5 cut(s)	41, 131, 207, 215, 497
LweI	GCATC	2 cut(s)	112, 312
MaeI	CTAG	1 cut(s)	87
MalI	GATC	3 cut(s)	318, 377, 447
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	3 cut(s)	316, 375, 445
MboII	GAAGA	3 cut(s)	199, 292, 559
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	1 cut(s)	375
MluCI	AATT	5 cut(s)	210, 416, 435, 464, 485
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	143, 235, 406, 487, 496, 557, 651
MseI	TTAA	3 cut(s)	264, 672, 696
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	5 cut(s)	38, 223, 399, 469, 478
NdeII	GATC	3 cut(s)	316, 375, 445
NheI	GCTAGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	95, 371, 452, 669
NlaIV	GGNNCC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	684
PfoI	TCCNGGA	1 cut(s)	11
PkrI	GCNGC	5 cut(s)	31, 146, 197, 205, 512
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	50
PstI	CTGCAG	2 cut(s)	241, 349
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	264, 672, 696
SatI	GCNGC	5 cut(s)	30, 145, 196, 204, 511
Sau3AI	GATC	3 cut(s)	316, 375, 445
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	112, 312
SfcI	CTRYAG	3 cut(s)	237, 345, 550
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	210, 416, 435, 464, 485
SsiI	CCGC	2 cut(s)	193, 217
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	554, 627
TaqI	TCGA	2 cut(s)	309, 687
TasI	AATT	5 cut(s)	210, 416, 435, 464, 485
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	3 cut(s)	264, 672, 696
Tru9I	TTAA	3 cut(s)	264, 672, 696
TscAI	CASTG	2 cut(s)	41, 349
TseI	GCWGC	5 cut(s)	29, 144, 195, 203, 510
TspDTI	ATGAA	3 cut(s)	75, 195, 464
TspRI	CASTG	2 cut(s)	41, 349
XapI	RAATTY	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.