Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Reverse (-)

117984 .. 118900

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggatgaggaagggaaaagcaagagtgcaatgcaaaagtgcaacttaggacctcttgtgatccctattgaaggttgtaatgttccactgattgttgtgaagagtgatggaggctacaactatgcgacaaccgatttggcagctctttggtatcggctaaatgaagagaaagctgagtgggttatatatgttactgatgccaaacccctcctgactcgctgcgccaatgtggttagattagttgatttactggatgaagcgaagaaccgcagcaaagcagctctaattgagcggggggctgttggttatggtgctgttaagtatgctgacctgaagaatagtagatgtagcaaatacaagttcgattttgatcagatgctaaatgataagggaagcactgcagtttacttgctctatgctcatgctcggatctgttctataatgagcaaatctggcagaaacatagaggaattgaaaagaacaggagaaattgtgctggatcatgttggggaacggcaattggtgcttcatttgctaaaattttctgaggctgtggaggagagctgcaccactctattgccgaatgttttgactgactacctctacagtttatcagaaatcttcactaagttctatgaagactgcaatgttgttgggagttcacaggaaacaagtagactgttgctttgtgaagcaacagccttagtgatgaggaaatcatgttttaatctgctcagaatcgaacctgttaacaagctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

253

Amino Acids

28.4

Weight (kDa)

6.35

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	676
AciI	CCGC	2 cut(s)	268, 292
AclWI	GGATC	3 cut(s)	55, 437, 507
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	71, 475
AluBI	AGCT	5 cut(s)	143, 173, 281, 564, 757
AluI	AGCT	5 cut(s)	143, 173, 281, 564, 757
AlwI	GGATC	3 cut(s)	55, 437, 507
ApeKI	GCWGC	5 cut(s)	140, 219, 270, 278, 564
ApoI	RAATTY	1 cut(s)	539
ArsI	GACNNNNNNTTYG	4 cut(s)	118, 150, 669, 701
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	5 cut(s)	152, 206, 282, 290, 551
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	370
BfmI	CTRYAG	2 cut(s)	399, 604
BisI	GCNGC	5 cut(s)	141, 220, 271, 279, 565
BlsI	GCNGC	5 cut(s)	142, 221, 272, 280, 566
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmsI	GCATC	2 cut(s)	187, 366
BpiI	GAAGAC	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	36, 652
Bse8I	GATNNNNATC	1 cut(s)	369
BseGI	GGATG	2 cut(s)	10, 259
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	2 cut(s)	36, 652
BseMII	CTCAG	3 cut(s)	165, 537, 748
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	5 cut(s)	152, 206, 282, 290, 551
BsgI	GTGCAG	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	60, 370, 429, 499
BspACI	CCGC	2 cut(s)	268, 292
BspCNI	CTCAG	3 cut(s)	166, 538, 747
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	3 cut(s)	55, 437, 507
BsrBI	CCGCTC	1 cut(s)	292
BsrDI	GCAATG	2 cut(s)	36, 652
BsrI	ACTGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	60, 370, 429, 499
Bst4CI	ACNGT	2 cut(s)	608, 681
Bst6I	CTCTTC	2 cut(s)	95, 159
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstDEI	CTNAG	6 cut(s)	46, 174, 546, 627, 703, 734
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	10, 259
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	4 cut(s)	63, 373, 432, 502
BstMBI	GATC	4 cut(s)	60, 370, 429, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	453, 523, 532
BstSFI	CTRYAG	2 cut(s)	399, 604
BstV1I	GCAGC	5 cut(s)	152, 206, 282, 290, 551
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	10, 259
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	86, 396
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	3 cut(s)	422, 503, 720
DdeI	CTNAG	6 cut(s)	46, 174, 546, 627, 703, 734
DpnI	GATC	4 cut(s)	62, 372, 431, 501
DpnII	GATC	4 cut(s)	60, 370, 429, 499
Eam1104I	CTCTTC	2 cut(s)	95, 159
EarI	CTCTTC	2 cut(s)	95, 159
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	50
FaeI	CATG	3 cut(s)	425, 506, 723
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	3 cut(s)	421, 502, 719
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	676
Fnu4HI	GCNGC	5 cut(s)	141, 220, 271, 279, 565
FokI	GGATG	2 cut(s)	17, 266
Fsp4HI	GCNGC	5 cut(s)	141, 220, 271, 279, 565
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	141, 220, 271, 279, 565
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	425, 506, 723
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	2 cut(s)	214, 738
HpaI	GTTAAC	1 cut(s)	751
Hpy166II	GTNNAC	4 cut(s)	406, 662, 677, 751
Hpy188I	TCNGA	5 cut(s)	375, 429, 547, 616, 737
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	4 cut(s)	406, 662, 677, 751
HpyAV	CCTTC	2 cut(s)	5, 65
HpyCH4III	ACNGT	2 cut(s)	608, 681
HpyCH4V	TGCA	6 cut(s)	29, 34, 42, 401, 567, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	453, 523, 532
HpyF3I	CTNAG	6 cut(s)	46, 174, 546, 627, 703, 734
Hsp92II	CATG	3 cut(s)	425, 506, 723
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	60, 370, 429, 499
LpnPI	CCDG	7 cut(s)	224, 236, 344, 438, 468, 482, 650
Lsp1109I	GCAGC	5 cut(s)	152, 206, 282, 290, 551
LweI	GCATC	2 cut(s)	187, 366
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	4 cut(s)	62, 372, 431, 501
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	4 cut(s)	60, 370, 429, 499
MboII	GAAGA	6 cut(s)	112, 176, 274, 346, 613, 650
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	1 cut(s)	429
MluCI	AATT	5 cut(s)	285, 470, 489, 518, 539
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	8 cut(s)	63, 104, 218, 460, 541, 550, 611, 705
MseI	TTAA	3 cut(s)	318, 726, 750
MunI	CAATTG	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	453, 523, 532
NdeII	GATC	4 cut(s)	60, 370, 429, 499
NlaIII	CATG	3 cut(s)	425, 506, 723
PfeI	GAWTC	1 cut(s)	738
PkrI	GCNGC	5 cut(s)	142, 221, 272, 280, 566
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	318, 726, 750
SatI	GCNGC	5 cut(s)	141, 220, 271, 279, 565
Sau3AI	GATC	4 cut(s)	60, 370, 429, 499
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	187, 366
SfcI	CTRYAG	2 cut(s)	399, 604
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	5 cut(s)	285, 470, 489, 518, 539
SsiI	CCGC	2 cut(s)	268, 292
TaaI	ACNGT	2 cut(s)	608, 681
TaqI	TCGA	2 cut(s)	363, 741
TasI	AATT	5 cut(s)	285, 470, 489, 518, 539
TfiI	GAWTC	1 cut(s)	738
Tru1I	TTAA	3 cut(s)	318, 726, 750
Tru9I	TTAA	3 cut(s)	318, 726, 750
TscAI	CASTG	2 cut(s)	93, 403
TseI	GCWGC	5 cut(s)	140, 219, 270, 278, 564
TspDTI	ATGAA	4 cut(s)	177, 270, 518, 651
TspRI	CASTG	2 cut(s)	93, 403
VpaK11BI	GGWCC	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.