G-quadruplex DNA unwinding
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151 |
| rosa_laevigata | RLG00000001515 RLG00000001518 RLG00000029042 |
| rosa_multiflora | Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00311380 Rroxscaffold_7G00156350 |
| rosa_rugosa | Rorug02G0279300 Rorug05G0117200 |
| rosa_samantha | Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100 |
| rosa_wichuraiana | Rw7G034010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 152 |
| AclWI | GGATC | 1 cut(s) | 133 |
| AflIII | ACRYGT | 1 cut(s) | 150 |
| AgsI | TTSAA | 3 cut(s) | 84, 122, 307 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 227 |
| AlwI | GGATC | 1 cut(s) | 133 |
| AsuC2I | CCSGG | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 1 cut(s) | 182 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 244, 277 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| BbsI | GAAGAC | 1 cut(s) | 153 |
| BccI | CCATC | 1 cut(s) | 84 |
| BciVI | GTATCC | 1 cut(s) | 245 |
| BcnI | CCSGG | 1 cut(s) | 277 |
| BfuI | GTATCC | 1 cut(s) | 245 |
| Bme1390I | CCNGG | 1 cut(s) | 277 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 227 |
| BmrFI | CCNGG | 1 cut(s) | 277 |
| BmsI | GCATC | 2 cut(s) | 14, 206 |
| BpiI | GAAGAC | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 277 |
| Bse3DI | GCAATG | 1 cut(s) | 165 |
| BseGI | GGATG | 1 cut(s) | 56 |
| BseMI | GCAATG | 1 cut(s) | 165 |
| BseMII | CTCAG | 1 cut(s) | 192 |
| Bsh1236I | CGCG | 1 cut(s) | 152 |
| BsiSI | CCGG | 1 cut(s) | 276 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| Bsp1286I | GDGCHC | 1 cut(s) | 300 |
| Bsp143I | GATC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 1 cut(s) | 191 |
| BspFNI | CGCG | 1 cut(s) | 152 |
| BspPI | GGATC | 1 cut(s) | 133 |
| BsrDI | GCAATG | 1 cut(s) | 165 |
| BssMI | GATC | 1 cut(s) | 125 |
| Bst4CI | ACNGT | 3 cut(s) | 260, 268, 287 |
| Bst6I | CTCTTC | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 215 |
| BstDEI | CTNAG | 1 cut(s) | 178 |
| BstF5I | GGATG | 1 cut(s) | 56 |
| BstFNI | CGCG | 1 cut(s) | 152 |
| BstKTI | GATC | 1 cut(s) | 128 |
| BstMBI | GATC | 1 cut(s) | 125 |
| BstSCI | CCNGG | 1 cut(s) | 275 |
| BstUI | CGCG | 1 cut(s) | 152 |
| BstV2I | GAAGAC | 1 cut(s) | 153 |
| BsuI | GTATCC | 1 cut(s) | 245 |
| BtsCI | GGATG | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 1 cut(s) | 215 |
| CseI | GACGC | 2 cut(s) | 158, 320 |
| CviJI | RGCY | 1 cut(s) | 298 |
| CviKI_1 | RGCY | 1 cut(s) | 298 |
| DdeI | CTNAG | 1 cut(s) | 178 |
| DpnI | GATC | 1 cut(s) | 127 |
| DpnII | GATC | 1 cut(s) | 125 |
| DriI | GACNNNNNGTC | 1 cut(s) | 227 |
| Eam1104I | CTCTTC | 1 cut(s) | 332 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 1 cut(s) | 332 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| FaiI | YATR | 2 cut(s) | 134, 202 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FokI | GGATG | 1 cut(s) | 63 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| HapII | CCGG | 1 cut(s) | 276 |
| HgaI | GACGC | 2 cut(s) | 158, 320 |
| HinfI | GANTC | 1 cut(s) | 242 |
| HpaII | CCGG | 1 cut(s) | 276 |
| HphI | GGTGA | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 1 cut(s) | 56 |
| Hpy188III | TCNNGA | 1 cut(s) | 246 |
| Hpy8I | GTNNAC | 1 cut(s) | 56 |
| HpyAV | CCTTC | 4 cut(s) | 38, 116, 161, 332 |
| HpyCH4III | ACNGT | 3 cut(s) | 260, 268, 287 |
| HpyF3I | CTNAG | 1 cut(s) | 178 |
| Kzo9I | GATC | 1 cut(s) | 125 |
| LpnPI | CCDG | 4 cut(s) | 25, 177, 231, 289 |
| LweI | GCATC | 2 cut(s) | 14, 206 |
| MaeIII | GTNAC | 1 cut(s) | 281 |
| MalI | GATC | 1 cut(s) | 127 |
| MboI | GATC | 1 cut(s) | 125 |
| MboII | GAAGA | 4 cut(s) | 158, 319, 322, 325 |
| MfeI | CAATTG | 1 cut(s) | 302 |
| MhlI | GDGCHC | 1 cut(s) | 300 |
| MluCI | AATT | 3 cut(s) | 65, 79, 302 |
| MluI | ACGCGT | 1 cut(s) | 150 |
| MmeI | TCCRAC | 2 cut(s) | 21, 118 |
| MnlI | CCTC | 3 cut(s) | 41, 100, 242 |
| MseI | TTAA | 1 cut(s) | 78 |
| MspI | CCGG | 1 cut(s) | 276 |
| MspR9I | CCNGG | 1 cut(s) | 277 |
| MunI | CAATTG | 1 cut(s) | 302 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MvnI | CGCG | 1 cut(s) | 152 |
| NciI | CCSGG | 1 cut(s) | 277 |
| NdeII | GATC | 1 cut(s) | 125 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PfeI | GAWTC | 1 cut(s) | 242 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| Sau3AI | GATC | 1 cut(s) | 125 |
| ScrFI | CCNGG | 1 cut(s) | 277 |
| SduI | GDGCHC | 1 cut(s) | 300 |
| SetI | ASST | 2 cut(s) | 61, 172 |
| SfaNI | GCATC | 2 cut(s) | 14, 206 |
| Sse9I | AATT | 3 cut(s) | 65, 79, 302 |
| StyD4I | CCNGG | 1 cut(s) | 275 |
| TaaI | ACNGT | 3 cut(s) | 260, 268, 287 |
| TaqI | TCGA | 2 cut(s) | 128, 294 |
| TasI | AATT | 3 cut(s) | 65, 79, 302 |
| TfiI | GAWTC | 1 cut(s) | 242 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TspDTI | ATGAA | 3 cut(s) | 159, 260, 279 |