Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

55851258 .. 55865091

Gene Structure 13834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCACTCTTCAATCCAAATCCTAATTAACAATGCTGGAATATTTGCTACATCGTCTAGATTCACCGCCGAAGGCTATGATCATGCTGTGGATCCTGGTGTTGTTGAAACCAACATAATGCTAGAAGTTCCTCCATGCCTATCCAGTTTGGCTTTCGAAGTTTTGAGACTCCTGTGCCTCTTGCAGTCACCTGAAGTTGGAATTAGCTCCATTCTCAATCCAGCACTGATGGCATCTACCAGCACAACGAAACGGGTCAAAAGATTGTTGGAAGGAGGATGTAAACCTAATCAATTTTATCAAGTTAATTCAAAGAGATGGAAAAGAATGTTTAAGGAACAAGTAGTTGAAGGATCGAATACAGTTGGAGATGAAGATGCGTTCGCAATGCCGGAAGGCCTGCTGCTTGATTTCCGGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

140

Amino Acids

15.44

Weight (kDa)

5.67

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	3 cut(s)	86, 99, 361
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	12, 107, 312, 350
AjiI	CACGTC	1 cut(s)	420
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	3 cut(s)	86, 99, 361
Aor13HI	TCCGGA	1 cut(s)	414
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	55, 180
AsuII	TTCGAA	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	223, 312
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	57, 122
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	96
BmgBI	CACGTC	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	2 cut(s)	242, 367
Bpu14I	TTCGAA	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	392, 415
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	79, 91, 353
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	3 cut(s)	86, 99, 361
BspT104I	TTCGAA	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	79, 91, 353
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	82, 94, 356
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	79, 91, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	399
BtrI	CACGTC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	401
CviAII	CATG	2 cut(s)	83, 135
CviJI	RGCY	4 cut(s)	75, 152, 207, 399
CviKI_1	RGCY	4 cut(s)	75, 152, 207, 399
DpnI	GATC	3 cut(s)	81, 93, 355
DpnII	GATC	3 cut(s)	79, 91, 353
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	86, 138
FaiI	YATR	4 cut(s)	78, 84, 116, 136
FatI	CATG	2 cut(s)	82, 134
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	57, 122
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	2 cut(s)	392, 415
Hin1II	CATG	2 cut(s)	86, 138
HinfI	GANTC	2 cut(s)	60, 168
HpaII	CCGG	2 cut(s)	392, 415
HphI	GGTGA	2 cut(s)	55, 180
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188III	TCNNGA	2 cut(s)	57, 415
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	65, 266, 344, 389
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	2 cut(s)	4, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	86, 138
Kpn2I	TCCGGA	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 91, 353
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	242, 367
MaeI	CTAG	2 cut(s)	57, 122
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	3 cut(s)	81, 93, 355
MboI	GATC	3 cut(s)	79, 91, 353
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	4 cut(s)	24, 201, 293, 307
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	3 cut(s)	178, 249, 346
MnlI	CCTC	3 cut(s)	141, 188, 269
MroI	TCCGGA	1 cut(s)	414
MseI	TTAA	3 cut(s)	27, 306, 333
MspI	CCGG	2 cut(s)	392, 415
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	3 cut(s)	79, 91, 353
NlaIII	CATG	2 cut(s)	86, 138
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	27, 306, 333
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	3 cut(s)	79, 91, 353
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	4 cut(s)	193, 209, 289, 422
SfaNI	GCATC	2 cut(s)	242, 367
SfuI	TTCGAA	1 cut(s)	156
Sse9I	AATT	4 cut(s)	24, 201, 293, 307
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	2 cut(s)	57, 122
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	156, 356
TasI	AATT	4 cut(s)	24, 201, 293, 307
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	3 cut(s)	27, 306, 333
Tru9I	TTAA	3 cut(s)	27, 306, 333
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	231
XbaI	TCTAGA	1 cut(s)	56
XspI	CTAG	2 cut(s)	57, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.