Rh7DG405000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
56193651 .. 56230552
36902 bp
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UTR
Exon/CDS
Intron
Rh7DG405000.1

Sequence Viewer

Length: 438 bp
ATGGACTCTCACTCTTCTCATCTCTTACTGGAACCTCCTTTTCGCCTCGATTGCTCCTCCTTCCAGATCATCACCTCCCTCATTTCAATCCAGGCCCATTTGCGGGCTACTTCTGGATTGGGCGCTGCGGCGGCCCATGCTCTCTCCGCTCACGCCTACTTTGTGGTTCTTGGGAAGCAGAACAAGGAAGCACCACTTCATCATCACTGGCAAAAGAAGAACATGGGAAGGAAAACAAGGATGGAAAAGAATGTTGCTGTTTGGAATGCCATGATTTCTGCAAATACAGGTTGGTATTTGGCGTGGAAGCTATATATCTCATTGGCCTCATACTCGCCAGTTGCCAACAAACGACACACAACGAAGAAGAAGATAACCATATCCCAAGACTCTCGTAGGAGTGCTACAAGAATGCAAGCAATGAAGATTTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.3

Weight (kDa)

10.45

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 149
AciI CCGC 4 cut(s) 103, 128, 131, 147
AfiI CCNNNNNNNGG 2 cut(s) 102, 103
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AoxI GGCC 3 cut(s) 93, 132, 324
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 94, 133
AsuHPI GGTGA 1 cut(s) 64
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 3 cut(s) 126, 129, 132
BlsI GCNGC 3 cut(s) 127, 130, 133
Bme1390I CCNGG 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 94, 133
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 103
Bse1I ACTGG 3 cut(s) 33, 212, 338
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 102, 103
BseMI GCAATG 1 cut(s) 426
BseNI ACTGG 3 cut(s) 33, 212, 338
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 3 cut(s) 95, 134, 326
BslI CCNNNNNNNGG 2 cut(s) 102, 103
BsmI GAATGC 2 cut(s) 271, 417
BsnI GGCC 3 cut(s) 95, 134, 326
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 4 cut(s) 103, 128, 131, 147
BspANI GGCC 3 cut(s) 95, 134, 326
BspLI GGNNCC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 33, 212, 338
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 105, 417
BstF5I GGATG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 51, 131, 137, 146
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 3 cut(s) 95, 134, 326
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 105, 417
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 94, 133
CviAII CATG 3 cut(s) 137, 223, 271
CviJI RGCY 5 cut(s) 95, 107, 134, 310, 326
CviKI_1 RGCY 5 cut(s) 95, 107, 134, 310, 326
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 140, 226, 274
FaiI YATR 7 cut(s) 138, 224, 272, 313, 315, 331, 380
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 3 cut(s) 136, 222, 270
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 126, 129, 132
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 126, 129, 132
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 126, 129, 132
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 95, 134, 326
HhaI GCGC 1 cut(s) 125
Hin1II CATG 3 cut(s) 140, 226, 274
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 5, 389
HphI GGTGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 64, 114
HpyAV CCTTC 2 cut(s) 70, 222
HpyCH4V TGCA 2 cut(s) 281, 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 131, 137, 146
Hsp92II CATG 3 cut(s) 140, 226, 274
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 8 cut(s) 14, 77, 77, 99, 104, 193, 273, 351
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 1 cut(s) 68
MbiI CCGCTC 1 cut(s) 149
MboI GATC 1 cut(s) 66
MboII GAAGA 6 cut(s) 6, 229, 376, 379, 382, 436
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 6 cut(s) 45, 56, 67, 85, 89, 337
MspR9I CCNGG 1 cut(s) 92
Mva1269I GAATGC 2 cut(s) 271, 417
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 51, 131, 137, 146
NdeII GATC 1 cut(s) 66
NlaIII CATG 3 cut(s) 140, 226, 274
NlaIV GGNNCC 1 cut(s) 33
PctI GAATGC 2 cut(s) 271, 417
PkrI GCNGC 3 cut(s) 127, 130, 133
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 94, 133
SatI GCNGC 3 cut(s) 126, 129, 132
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 94, 133
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 92
SetI ASST 4 cut(s) 37, 77, 292, 312
SsiI CCGC 4 cut(s) 103, 128, 131, 147
StyD4I CCNGG 1 cut(s) 90
TaqI TCGA 1 cut(s) 48
TauI GCSGC 2 cut(s) 131, 134
TscAI CASTG 1 cut(s) 212
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 188, 437
TspRI CASTG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.