Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001621.1

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

33652 .. 34923

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001621.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggagaatgggcctgctactatggactctcagtcttctcatctcttactggaacctccttttcgcctcgattactcctccttccagatcatcacctccctcatttcaatccaggtccatttgcaggctacttctggattgggcgctgcggcggcccatgctctctccgctcacgccttctttgtggttcttgttggacgctcatctcacttgttagaaaaggtacctaatctcctcggctttcaaatttccgactcacaaatgcactcttcaatccaactcctagttaacaatgctggaatatttgctacatcgtctagattcaccgccgaaggctatgatcatgctgtggatcctggtgttgttgaaaccaacataatgcgagaagttcctccatgcctatccagtttggctttcgaagttttgagactcctgtgcctcttgcagtcacctgaagttggaattagctccattcttgactccgcacttgctccaccagtaagtttatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

170

Amino Acids

18.17

Weight (kDa)

5.13

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	5 cut(s)	149, 152, 168, 327, 483
AclWI	GGATC	2 cut(s)	347, 360
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	124, 458
AgsI	TTSAA	4 cut(s)	108, 245, 273, 368
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	111, 355
AluBI	AGCT	1 cut(s)	468
AluI	AGCT	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	347, 360
AoxI	GGCC	2 cut(s)	11, 153
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	11, 115, 154
AsuHPI	GGTGA	3 cut(s)	85, 316, 441
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	113, 357
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	2 cut(s)	284, 318
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	3 cut(s)	147, 150, 153
BlsI	GCNGC	3 cut(s)	148, 151, 154
Bme1390I	CCNGG	2 cut(s)	113, 357
Bme18I	GGWCC	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	11, 115, 154
BmiI	GGNNCC	3 cut(s)	54, 225, 354
BmrFI	CCNGG	2 cut(s)	113, 357
BpiI	GAAGAC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 458
Bse1I	ACTGG	3 cut(s)	54, 405, 497
BseBI	CCWGG	2 cut(s)	113, 357
BseDI	CCNNGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	124, 458
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	54, 405, 497
BseRI	GAGGAG	2 cut(s)	67, 224
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	13, 155
BshNI	GGYRCC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	124, 458
BsmAI	GTCTC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	13, 155
Bsp119I	TTCGAA	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	87, 340, 352
BspACI	CCGC	5 cut(s)	149, 152, 168, 327, 483
BspANI	GGCC	2 cut(s)	13, 155
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	54, 225, 354
BspPI	GGATC	2 cut(s)	347, 360
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	54, 405, 497
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	87, 340, 352
Bst2UI	CCWGG	2 cut(s)	113, 357
Bst6I	CTCTTC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	15, 126
BstDEI	CTNAG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	3 cut(s)	90, 343, 355
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	87, 340, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 158, 167
BstNI	CCWGG	2 cut(s)	113, 357
BstSCI	CCNGG	2 cut(s)	111, 355
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	13, 155
Cac8I	GCNNGC	2 cut(s)	15, 126
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	11, 115, 154
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	158, 344, 396
CviJI	RGCY	7 cut(s)	13, 128, 155, 240, 336, 413, 468
CviKI_1	RGCY	7 cut(s)	13, 128, 155, 240, 336, 413, 468
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	89, 342, 354
DpnII	GATC	3 cut(s)	87, 340, 352
DriI	GACNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	111, 355
FaeI	CATG	3 cut(s)	161, 347, 399
FaiI	YATR	7 cut(s)	23, 159, 339, 345, 377, 397, 508
FatI	CATG	3 cut(s)	157, 343, 395
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	147, 150, 153
Fsp4HI	GCNGC	3 cut(s)	147, 150, 153
FspBI	CTAG	2 cut(s)	284, 318
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	147, 150, 153
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	13, 155
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	161, 347, 399
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	5 cut(s)	26, 254, 321, 429, 479
HpaI	GTTAAC	1 cut(s)	289
HphI	GGTGA	3 cut(s)	85, 316, 441
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	4 cut(s)	85, 135, 318, 476
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	91, 187, 326
HpyCH4V	TGCA	3 cut(s)	124, 265, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 158, 167
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	161, 347, 399
HspAI	GCGC	1 cut(s)	144
KpnI	GGTACC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	87, 340, 352
LmnI	GCTCC	2 cut(s)	473, 496
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	284, 318
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	3 cut(s)	89, 342, 354
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	3 cut(s)	87, 340, 352
MboII	GAAGA	2 cut(s)	27, 261
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	2 cut(s)	246, 462
MlyI	GAGTC	4 cut(s)	20, 248, 423, 473
MmeI	TCCRAC	4 cut(s)	175, 276, 301, 439
MnlI	CCTC	8 cut(s)	66, 77, 88, 106, 110, 245, 402, 449
MseI	TTAA	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	113, 357
MvaI	CCWGG	2 cut(s)	113, 357
MwoI	GCNNNNNNNGC	3 cut(s)	152, 158, 167
NdeII	GATC	3 cut(s)	87, 340, 352
NlaIII	CATG	3 cut(s)	161, 347, 399
NlaIV	GGNNCC	3 cut(s)	54, 225, 354
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	447
NspV	TTCGAA	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	148, 151, 154
PleI	GAGTC	4 cut(s)	20, 248, 423, 473
PpsI	GAGTC	4 cut(s)	20, 248, 423, 473
Psp6I	CCWGG	2 cut(s)	111, 355
PspGI	CCWGG	2 cut(s)	111, 355
PspN4I	GGNNCC	3 cut(s)	54, 225, 354
PspPI	GGNCC	3 cut(s)	11, 115, 154
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	147, 150, 153
Sau3AI	GATC	3 cut(s)	87, 340, 352
Sau96I	GGNCC	3 cut(s)	11, 115, 154
SchI	GAGTC	4 cut(s)	20, 248, 423, 473
ScrFI	CCNGG	2 cut(s)	113, 357
SetI	ASST	7 cut(s)	58, 98, 117, 225, 229, 454, 470
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	2 cut(s)	246, 462
SsiI	CCGC	5 cut(s)	149, 152, 168, 327, 483
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	2 cut(s)	284, 318
StyD4I	CCNGG	2 cut(s)	111, 355
TaqI	TCGA	2 cut(s)	69, 417
TasI	AATT	2 cut(s)	246, 462
TauI	GCSGC	2 cut(s)	152, 155
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	2 cut(s)	284, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.