Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

31861071 .. 31863198

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACCTTTGCAACGCGCTGTGGAGGCCTGTGTTATCTTAGCCACCAGATCAAGGTTTTCTGTTATCTGGTGATGAGGCTGAGGCTAGGAGTTGTGTGCTTTGAAAGCATCGACTGCTTCAGATCTGAGCCACCAGATCATAGCCGCTCATCGGAGCGATGGCGGAGCTTTGGGGCCGTTTCAGTTGCAATTAGACTCGTCAAAGGTTCGAACCAGAACGCCGGCATCGATCGGAGGAGGTCGATTTCATGTCTCCGTTTTGGAATTGAAATCTTTGGACGCTCATCTCACTTGTTACAAAAGAAGCTTTCGAGGTTGGATCTCTCATCATTCCAGTCGATTCTTCAGTTTAAAGCCTCTTCAATCCAACTCCTAATTAACAATGCTGGAATATTTGCTACATCGTCTAGATTCATCTCTGAAGGCTATGATCAAATGATGGCTACAAATTACTTGAGTGCATTTTCTCTTAGTAAACTATTATCACCACTTCTCAGAAACATCCCAGTACCTTCCCGTATACTGAATGTCACATCTTTCACACATCGAAGTGGTGACTGTGCTGGTGGATCCTGCTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

195

Amino Acids

21.61

Weight (kDa)

9.73

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	118 - 181	2.8e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	520
AccII	CGCG	1 cut(s)	16
AciI	CCGC	2 cut(s)	145, 163
AclWI	GGATC	3 cut(s)	327, 564, 577
AcuI	CTGAAG	3 cut(s)	103, 329, 441
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	52, 151
AgsI	TTSAA	3 cut(s)	104, 269, 363
AluBI	AGCT	2 cut(s)	168, 307
AluI	AGCT	2 cut(s)	168, 307
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	327, 564, 577
AoxI	GGCC	2 cut(s)	25, 174
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	82, 477, 566
AsuII	TTCGAA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	80
BccI	CCATC	2 cut(s)	153, 433
BceAI	ACGGC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	86, 408
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	175, 571
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	117, 234
BmuI	ACTGGG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 151
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	334, 506
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	52, 151
BseMII	CTCAG	3 cut(s)	71, 117, 508
BseNI	ACTGG	2 cut(s)	334, 506
BseRI	GAGGAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	27, 176
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	52, 151
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	27, 176
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
BspACI	CCGC	2 cut(s)	145, 163
BspANI	GGCC	2 cut(s)	27, 176
BspCNI	CTCAG	3 cut(s)	72, 118, 507
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	175, 571
BspPI	GGATC	3 cut(s)	327, 564, 577
BspT104I	TTCGAA	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	334, 506
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
BssNAI	GTATAC	1 cut(s)	521
Bst1107I	GTATAC	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	5 cut(s)	38, 80, 126, 470, 494
BstF5I	GGATG	1 cut(s)	501
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	7 cut(s)	51, 125, 139, 232, 322, 433, 572
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 105, 114
BstUI	CGCG	1 cut(s)	16
BstX2I	RGATCY	3 cut(s)	122, 319, 569
BstYI	RGATCY	3 cut(s)	122, 319, 569
BstZ17I	GTATAC	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	27, 176
BsuTUI	ATCGAT	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	1 cut(s)	249
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	5 cut(s)	38, 80, 126, 470, 494
DpnI	GATC	7 cut(s)	50, 124, 138, 231, 321, 432, 571
DpnII	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
DraI	TTTAAA	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	103, 329, 441
FaeI	CATG	1 cut(s)	252
FaiI	YATR	4 cut(s)	141, 250, 429, 521
FatI	CATG	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	86, 408
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	27, 176
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	195, 340, 411
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	3 cut(s)	82, 477, 566
Hpy166II	GTNNAC	2 cut(s)	476, 521
Hpy188I	TCNGA	6 cut(s)	122, 127, 154, 234, 421, 497
Hpy188III	TCNNGA	1 cut(s)	408
Hpy8I	GTNNAC	2 cut(s)	476, 521
HpyAV	CCTTC	2 cut(s)	416, 522
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4V	TGCA	3 cut(s)	11, 188, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 105, 114
HpyF3I	CTNAG	5 cut(s)	38, 80, 126, 470, 494
Hsp92II	CATG	1 cut(s)	252
HspAI	GCGC	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
LmnI	GCTCC	2 cut(s)	154, 165
LweI	GCATC	2 cut(s)	117, 234
MaeI	CTAG	2 cut(s)	86, 408
MaeIII	GTNAC	3 cut(s)	294, 529, 554
MalI	GATC	7 cut(s)	50, 124, 138, 231, 321, 432, 571
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
MboII	GAAGA	2 cut(s)	335, 351
MflI	RGATCY	3 cut(s)	122, 319, 569
MluCI	AATT	4 cut(s)	189, 264, 375, 448
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	297, 391
MnlI	CCTC	7 cut(s)	17, 69, 75, 228, 231, 306, 367
MroNI	GCCGGC	1 cut(s)	221
MseI	TTAA	2 cut(s)	351, 378
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	24, 105, 114
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	2 cut(s)	175, 571
NmuCI	GTSAC	2 cut(s)	529, 554
NspV	TTCGAA	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	340, 411
PkrI	GCNGC	1 cut(s)	146
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	175, 571
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	3 cut(s)	122, 319, 569
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	351, 378
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	7 cut(s)	48, 122, 136, 229, 319, 430, 569
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	189
SetI	ASST	8 cut(s)	8, 57, 170, 208, 242, 309, 317, 514
SfaNI	GCATC	2 cut(s)	117, 234
SfuI	TTCGAA	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	189, 264, 375, 448
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	145, 163
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	86, 408
StuI	AGGCCT	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	560
TaqI	TCGA	7 cut(s)	111, 209, 228, 242, 311, 338, 547
TasI	AATT	4 cut(s)	189, 264, 375, 448
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	340, 411
Tru1I	TTAA	2 cut(s)	351, 378
Tru9I	TTAA	2 cut(s)	351, 378
TseFI	GTSAC	2 cut(s)	529, 554
Tsp45I	GTSAC	2 cut(s)	529, 554
TspDTI	ATGAA	2 cut(s)	237, 403
TspGWI	ACGGA	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	520
XspI	CTAG	2 cut(s)	86, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.