Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

16754786 .. 16758112

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTAAGGAACGAGTTAGAGGAAGTGGCAAGCTGCTAAGTGTTGTCCCGATCGAGTCTGGGTGGCTGAGTTTGTCATCTTCTCCGGCTTTTCCCATCCAGTCTTACAGCTTTGTTTTGGGATTTGCTCCAAAGGCCGAGGATGATGCTACAGAATACTGGAGTGCATTTTCTCTTAGTAAACTATTATCACCACTTCTCAGAAACAGCCCAGTTCCTTCCTGTATTGTGAATGTCATATCTTTCACACATCAAAGTGGAAACATCTGGAGTTTACTTTTTTGGTGGAAAGGGCCAGACTGTCAGCTCTTCTATGCTTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

109

Amino Acids

12.02

Weight (kDa)

7.78

Isoelectric Point (pI)

66.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	34, 111, 307
AluI	AGCT	3 cut(s)	34, 111, 307
AoxI	GGCC	2 cut(s)	135, 293
ApeKI	GCWGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	181, 289
Bpu10I	CCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	3 cut(s)	100, 164, 212
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	96, 148
BseMII	CTCAG	2 cut(s)	59, 214
BseNI	ACTGG	3 cut(s)	100, 164, 212
BseXI	GCAGC	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	137, 295
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	137, 295
Bsp143I	GATC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	137, 295
BspCNI	CTCAG	2 cut(s)	60, 213
BspQI	GCTCTTC	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	100, 164, 212
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	5 cut(s)	6, 38, 68, 176, 200
BstF5I	GGATG	2 cut(s)	96, 148
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	137, 295
BtsCI	GGATG	2 cut(s)	96, 148
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	293
CviJI	RGCY	9 cut(s)	5, 34, 67, 89, 111, 137, 210, 295, 307
CviKI_1	RGCY	9 cut(s)	5, 34, 67, 89, 111, 137, 210, 295, 307
DdeI	CTNAG	5 cut(s)	6, 38, 68, 176, 200
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
FaiI	YATR	4 cut(s)	239, 315, 323, 325
FaqI	GGGAC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	83, 155
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	181, 289
HaeIII	GGCC	2 cut(s)	137, 295
HapII	CCGG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	2 cut(s)	182, 275
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	49, 268
Hpy8I	GTNNAC	2 cut(s)	182, 275
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	5 cut(s)	6, 38, 68, 176, 200
Kzo9I	GATC	1 cut(s)	51
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	45, 99, 113, 145, 225, 235, 253, 309
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	136
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	72, 301
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	14, 133
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	36
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	314
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	65
SetI	ASST	3 cut(s)	36, 113, 309
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	54
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.