Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

33773583 .. 33774813

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGGTTAAAAGAATGGGCCTATGCAATTCTGGAGAATGGGCCTGCTACTATGGACTCTCAGTCTTCCAGGCTACTTCTGCATCATGCTCTCTCCGCTCATGGCTTCTTTGCGGTTCTTGTTGGTCGCTCATCTCACTTGTTAGAAAAGACGATGATGGAAATTAAGAGGAAGACTGAGAGAAGGAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTTGGTTCTTCAGTTTAAAAGCCTCCCTACAGCAGTGGCTTTTCGACTCACAAATGCAGTACTCTTCAATCCAACTCCTAATTAACAATGCTGGAATATTTGCTACATCGTCTAGATTCACCTCTGAAGGCTATGATCAAAACAGCCCAGTTCCTTCCCGTATTGCGAATGTCACATCTTTCACACATCCAATTAGTAGTGATGCTGGTGGATCCTGGTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

147

Amino Acids

16.61

Weight (kDa)

9.56

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AciI	CCGC	2 cut(s)	96, 113
AclWI	GGATC	2 cut(s)	423, 436
AcuI	CTGAAG	2 cut(s)	211, 363
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	285
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	68, 431
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AlwI	GGATC	2 cut(s)	423, 436
AoxI	GGCC	2 cut(s)	18, 41
AspS9I	GGNCC	2 cut(s)	18, 41
AsuHPI	GGTGA	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	428
BbsI	GAAGAC	2 cut(s)	57, 179
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	70, 433
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	245
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	70, 433
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	18, 41
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	70, 433
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	91, 409
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	2 cut(s)	57, 179
BpmI	CTGGAG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	216, 365
BseBI	CCWGG	2 cut(s)	70, 433
BseGI	GGATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	74, 168
BseNI	ACTGG	2 cut(s)	216, 365
BshFI	GGCC	2 cut(s)	20, 43
BsnI	GGCC	2 cut(s)	20, 43
Bsp143I	GATC	3 cut(s)	201, 352, 428
BspACI	CCGC	2 cut(s)	96, 113
BspANI	GGCC	2 cut(s)	20, 43
BspCNI	CTCAG	2 cut(s)	73, 169
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	423, 436
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	216, 365
BssMI	GATC	3 cut(s)	201, 352, 428
Bst2UI	CCWGG	2 cut(s)	70, 433
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	60, 177
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	3 cut(s)	204, 355, 431
BstMBI	GATC	3 cut(s)	201, 352, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 95
BstNI	CCWGG	2 cut(s)	70, 433
BstSCI	CCNGG	2 cut(s)	68, 431
BstSFI	CTRYAG	1 cut(s)	245
BstV2I	GAAGAC	2 cut(s)	57, 179
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	20, 43
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	18, 41
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	86, 101
CviJI	RGCY	9 cut(s)	20, 43, 73, 105, 190, 239, 256, 348, 363
CviKI_1	RGCY	9 cut(s)	20, 43, 73, 105, 190, 239, 256, 348, 363
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	60, 177
DpnI	GATC	3 cut(s)	203, 354, 430
DpnII	GATC	3 cut(s)	201, 352, 428
DraI	TTTAAA	1 cut(s)	234
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	286
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	211, 363
EcoRII	CCWGG	2 cut(s)	68, 431
FaeI	CATG	2 cut(s)	89, 104
FaiI	YATR	5 cut(s)	24, 53, 87, 102, 351
FatI	CATG	2 cut(s)	85, 100
FbaI	TGATCA	1 cut(s)	352
FokI	GGATG	1 cut(s)	390
FspBI	CTAG	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	20, 43
Hin1II	CATG	2 cut(s)	89, 104
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	56, 263, 333
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	32, 330
HpyAV	CCTTC	3 cut(s)	177, 338, 381
HpyCH4V	TGCA	3 cut(s)	26, 82, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 95
HpyF3I	CTNAG	2 cut(s)	60, 177
Hsp92II	CATG	2 cut(s)	89, 104
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	201, 352, 428
LpnPI	CCDG	9 cut(s)	17, 55, 57, 82, 229, 294, 378, 408, 418
LweI	GCATC	2 cut(s)	91, 409
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	203, 354, 430
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	3 cut(s)	201, 352, 428
MboII	GAAGA	4 cut(s)	57, 184, 217, 273
MflI	RGATCY	1 cut(s)	428
MluCI	AATT	4 cut(s)	27, 162, 297, 408
MlyI	GAGTC	2 cut(s)	50, 257
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	162, 189, 250, 349
MseI	TTAA	4 cut(s)	8, 165, 233, 300
MspR9I	CCNGG	2 cut(s)	70, 433
MvaI	CCWGG	2 cut(s)	70, 433
MwoI	GCNNNNNNNGC	2 cut(s)	79, 95
NdeII	GATC	3 cut(s)	201, 352, 428
NlaIII	CATG	2 cut(s)	89, 104
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	333
PleI	GAGTC	2 cut(s)	50, 257
PpsI	GAGTC	2 cut(s)	50, 257
Psp6I	CCWGG	2 cut(s)	68, 431
PspGI	CCWGG	2 cut(s)	68, 431
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	2 cut(s)	18, 41
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	4 cut(s)	8, 165, 233, 300
Sau3AI	GATC	3 cut(s)	201, 352, 428
Sau96I	GGNCC	2 cut(s)	18, 41
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	2 cut(s)	50, 257
ScrFI	CCNGG	2 cut(s)	70, 433
SetI	ASST	4 cut(s)	8, 192, 200, 341
SfaNI	GCATC	2 cut(s)	91, 409
SfcI	CTRYAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	27, 162, 297, 408
SsiI	CCGC	2 cut(s)	96, 113
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	68, 431
TaqI	TCGA	2 cut(s)	194, 261
TasI	AATT	4 cut(s)	27, 162, 297, 408
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	4 cut(s)	8, 165, 233, 300
Tru9I	TTAA	4 cut(s)	8, 165, 233, 300
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspRI	CASTG	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	329
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.