Rh7DG403800

Dehydrogenase reductase SDR family member on chromosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005207
Physical Location & Seq
Forward (+)
55814258 .. 55815267
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG403800.1

Sequence Viewer

Length: 466 bp
ATGGACTCTCAGCCTTCTCATCCCTTACTGGAACCTCCTTTTCGCCTCGACTACTCCTCCTTCCAGATCATCACCTCCCTCATTTCAATCCTCTGCATCGTCACCGGTAAATTTGCAGGTTACTTCTTGATTGGGTGCTGCGGCGGCCATGCTCTCTCCGCTCATGGCTTCTTTGTGGTTCTTGTTGGACGCTTATCTCACTTGTTAGAAAAGACGATGATGGAAATTAAGAGGAAGAATGAGAGTGCGCATCTGAAAGCCTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCAGTTTAAAGCCTCCCTACAGCAGTGGCTTTCCCACTTGCAAATGCACCCTTCAATCCAACTCCTAATTAACAATGCTGGAATATTTGCTACATCGTCTACATGCACCTCCGAAGTCTATGATCGATCAAAAGGAAACCCATATGCTCATGTCTACGAGTATTCCAAAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

7.75

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 33 - 132 2e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 161
AccI GTMKAC 2 cut(s) 395, 450
AciI CCGC 3 cut(s) 141, 144, 159
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 87, 351
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 110
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 64, 94
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 3 cut(s) 139, 142, 145
BlsI GCNGC 3 cut(s) 140, 143, 146
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 2 cut(s) 105, 259
Bsa29I ATCGAT 1 cut(s) 421
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 33, 286
BseCI ATCGAT 1 cut(s) 421
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 33, 286
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 147
BshTI ACCGGT 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 421
BsiSI CCGG 1 cut(s) 105
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 66, 271, 418, 422
BspACI CCGC 3 cut(s) 141, 144, 159
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 33, 286
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 4 cut(s) 66, 271, 418, 422
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 4 cut(s) 69, 274, 421, 425
BstMBI GATC 4 cut(s) 66, 271, 418, 422
BstMWI GCNNNNNNNGC 2 cut(s) 144, 158
BstNSI RCATGY 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 421
BsuRI GGCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 421
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 326
BveI ACCTGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 421
CseI GACGC 1 cut(s) 198
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 4 cut(s) 149, 164, 399, 446
CviJI RGCY 6 cut(s) 13, 147, 168, 260, 308, 325
CviKI_1 RGCY 6 cut(s) 13, 147, 168, 260, 308, 325
DdeI CTNAG 1 cut(s) 9
DpnI GATC 4 cut(s) 68, 273, 420, 424
DpnII GATC 4 cut(s) 66, 271, 418, 422
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 281
FaeI CATG 4 cut(s) 152, 167, 402, 449
FaiI YATR 7 cut(s) 150, 165, 400, 417, 439, 441, 447
FatI CATG 4 cut(s) 148, 163, 398, 445
FauNDI CATATG 1 cut(s) 439
FblI GTMKAC 2 cut(s) 395, 450
Fnu4HI GCNGC 3 cut(s) 139, 142, 145
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 3 cut(s) 139, 142, 145
FspAI RTGCGCAY 1 cut(s) 249
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 139, 142, 145
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 250
Hin1II CATG 4 cut(s) 152, 167, 402, 449
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 5, 292
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 64, 94
Hpy166II GTNNAC 2 cut(s) 396, 451
Hpy188I TCNGA 2 cut(s) 255, 409
Hpy188III TCNNGA 2 cut(s) 64, 127
Hpy8I GTNNAC 2 cut(s) 396, 451
HpyAV CCTTC 4 cut(s) 24, 70, 271, 357
HpyCH4V TGCA 5 cut(s) 96, 116, 337, 343, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 158
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 4 cut(s) 152, 167, 402, 449
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 4 cut(s) 66, 271, 418, 422
LpnPI CCDG 6 cut(s) 14, 77, 102, 118, 299, 360
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 105, 259
MaeIII GTNAC 2 cut(s) 100, 119
MalI GATC 4 cut(s) 68, 273, 420, 424
MbiI CCGCTC 1 cut(s) 161
MboI GATC 4 cut(s) 66, 271, 418, 422
MboII GAAGA 2 cut(s) 247, 287
MluCI AATT 3 cut(s) 110, 225, 363
MmeI TCCRAC 2 cut(s) 166, 379
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 3 cut(s) 228, 303, 366
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 144, 158
NdeI CATATG 1 cut(s) 439
NdeII GATC 4 cut(s) 66, 271, 418, 422
NlaIII CATG 4 cut(s) 152, 167, 402, 449
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 100
NsbI TGCGCA 1 cut(s) 249
NspI RCATGY 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 292
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 3 cut(s) 140, 143, 146
PspN4I GGNNCC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 228, 303, 366
SatI GCNGC 3 cut(s) 139, 142, 145
Sau3AI GATC 4 cut(s) 66, 271, 418, 422
SetI ASST 5 cut(s) 37, 77, 121, 270, 407
SfaNI GCATC 2 cut(s) 105, 259
SfcI CTRYAG 1 cut(s) 314
Sse9I AATT 3 cut(s) 110, 225, 363
SsiI CCGC 3 cut(s) 141, 144, 159
SspI AATATT 1 cut(s) 381
TaqI TCGA 4 cut(s) 48, 264, 290, 421
TasI AATT 3 cut(s) 110, 225, 363
TauI GCSGC 2 cut(s) 144, 147
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 3 cut(s) 228, 303, 366
Tru9I TTAA 3 cut(s) 228, 303, 366
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 100
TspRI CASTG 1 cut(s) 326
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 395, 450
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.