Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

16721323 .. 16721743

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACTCTCACTCTTCTCATCTCTTACTGGAACCTCCTTTTCACCTCGATTGCTCCTCCTTCCAGATCATCACCTCCCTCATTTCAATCCAGGCCCATTTGCGGGCTACTTCTGGATTGGGCGCTGCGGTGGCCCATGCTTTCTCCGCTCATGCCTTCTCTGTGGTTCTTGTTGGACGCTCATCTCACTTGTTAGAAAAGGTACCTAATCTCCCCGGCTTTCAAATTTCCGACTCACAAATGCACTCTTCAATCCAACTCCTAATTAACAATGCTGGAATATTTGCTACATCGTCTAGATTCACCACCGATGGCTATCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

109

Amino Acids

11.62

Weight (kDa)

6.47

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	3 cut(s)	103, 128, 147
AcsI	RAATTY	1 cut(s)	225
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	102, 103
AgsI	TTSAA	3 cut(s)	87, 224, 252
AjnI	CCWGG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	93, 132
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	225
Asp718I	GGTACC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	94, 133
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	35, 64, 295
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	92, 216
BmgT120I	GGNCC	2 cut(s)	94, 133
BmiI	GGNNCC	2 cut(s)	33, 204
BmrFI	CCNGG	2 cut(s)	92, 216
BpuMI	CCSGG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 103
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	102, 103
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	95, 134
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	102, 103
BsnI	GGCC	2 cut(s)	95, 134
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	3 cut(s)	103, 128, 147
BspANI	GGCC	2 cut(s)	95, 134
BspLI	GGNNCC	2 cut(s)	33, 204
BspT107I	GGYRCC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	19, 253
BstC8I	GCNNGC	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 146
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 214
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	95, 134
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	94, 133
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	2 cut(s)	137, 152
CviJI	RGCY	5 cut(s)	95, 107, 134, 219, 315
CviKI_1	RGCY	5 cut(s)	95, 107, 134, 219, 315
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	19, 253
EarI	CTCTTC	2 cut(s)	19, 253
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	140, 155
FaiI	YATR	2 cut(s)	138, 153
FatI	CATG	2 cut(s)	136, 151
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	95, 134
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	140, 155
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	5, 233, 300
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	35, 64, 295
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	64, 114, 297
HpyAV	CCTTC	2 cut(s)	70, 166
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 146
Hsp92II	CATG	2 cut(s)	140, 155
HspAI	GCGC	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	14, 77, 77, 99, 104, 229, 261
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	297
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	66
MboII	GAAGA	2 cut(s)	6, 240
MluCI	AATT	2 cut(s)	225, 264
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	154, 255, 280
MnlI	CCTC	5 cut(s)	45, 56, 67, 85, 89
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	92, 216
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	131, 146
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	140, 155
NlaIV	GGNNCC	2 cut(s)	33, 204
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	33, 204
PspPI	GGNCC	2 cut(s)	94, 133
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	2 cut(s)	94, 133
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	92, 216
SetI	ASST	5 cut(s)	37, 48, 77, 204, 208
Sse9I	AATT	2 cut(s)	225, 264
SsiI	CCGC	3 cut(s)	103, 128, 147
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	90, 214
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	225, 264
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	296
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.