Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

56428219 .. 56429715

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG405500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTCAACGTGCTCCATTTTTTGACAGTGTTCCTACTGCTCTTCTCCTATGAGCTTCATCACCAACTTGGCTTGATGGACATATCTCGTCATGTCTCCGTAATTACTGTGGATCCTGGTGTTGTTGAAACCAACATCATGCGAGAAGTTCCTCCATGCCTATGCAGTTTGGCTTTCAAAGTTTTGAGACTTCTGTGCCTCTTGCAGTCACCTGAAGTTGGAATTAGCTCCATTCTTGACTCCGCACTTGCTCCACCAGGAAACCTCTACTTCTGTATCACATTGGGCATCATAGCATGGAGTGCATGCATTAGCTTAGGCAACCATGGTATAGCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

113

Amino Acids

12.36

Weight (kDa)

5.85

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	107, 120
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	7, 128, 178
AjnI	CCWGG	2 cut(s)	115, 256
AluBI	AGCT	4 cut(s)	55, 228, 315, 335
AluI	AGCT	4 cut(s)	55, 228, 315, 335
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	100, 181
AlwI	GGATC	2 cut(s)	107, 120
AsuHPI	GGTGA	2 cut(s)	53, 201
BaeI	ACNNNNGTAYC	2 cut(s)	259, 292
BamHI	GGATCC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	117, 258
BcoDI	GTCTC	2 cut(s)	100, 181
Bme1390I	CCNGG	2 cut(s)	117, 258
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	117, 258
BmsI	GCATC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	117, 258
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	100, 181
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	112
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	107, 120
BspQI	GCTCTTC	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	117, 258
Bst4CI	ACNGT	2 cut(s)	28, 109
Bst6I	CTCTTC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	2 cut(s)	100, 181
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	117, 258
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	115, 256
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	307
CviAII	CATG	6 cut(s)	92, 139, 156, 297, 306, 326
CviJI	RGCY	6 cut(s)	55, 72, 173, 228, 315, 335
CviKI_1	RGCY	6 cut(s)	55, 72, 173, 228, 315, 335
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	115, 256
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	6 cut(s)	95, 142, 159, 300, 309, 329
FatI	CATG	6 cut(s)	91, 138, 155, 296, 305, 325
Hin1II	CATG	6 cut(s)	95, 142, 159, 300, 309, 329
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	2 cut(s)	53, 201
Hpy188III	TCNNGA	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	28, 109
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	165, 205, 305, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	6 cut(s)	95, 142, 159, 300, 309, 329
Kzo9I	GATC	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	3 cut(s)	18, 233, 256
LpnPI	CCDG	5 cut(s)	102, 129, 225, 243, 270
LweI	GCATC	1 cut(s)	297
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	102, 222
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	162, 209, 275
Mph1103I	ATGCAT	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	117, 258
MvaI	CCWGG	2 cut(s)	117, 258
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	6 cut(s)	95, 142, 159, 300, 309, 329
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	115, 256
PspGI	CCWGG	2 cut(s)	115, 256
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	117, 258
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	12, 57, 214, 230, 267, 317, 337
SfaNI	GCATC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	160
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	2 cut(s)	102, 222
SsiI	CCGC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	115, 256
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	28, 109
TaiI	ACGT	1 cut(s)	12
TasI	AATT	2 cut(s)	102, 222
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	33
XceI	RCATGY	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.