Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

10367467 .. 10368321

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0117200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCGCAAATCATCCAGAAGAACCGCCCACGGTGGCCGACACCGAAACTGGACGGAACTCCCAGACGACATCACGGCGTCGATACTGTCACGGCTGGGAACGCTCGAGATCCTCAGGACGGCTCAGAGGGTATGCATGACGTGGCGAAGAATCTGCAAGGACAACTCTCTGGTTTGGCAATCCATCTACATCCACGATGAACATTACATCGACATGAGCTATTTGGACAAGATCTGCCGACACGTCATTGATCTTAGCTCTGGTAATCTTGTGGATATCAGTATTGAGTACATCGGCACCGATCAACTCCTCAAGTACATGGCTGAGAGCTCAAGCGGAATCAAACGCCTCCGATTCGTGAATTGCACTAGCTTAACAGACGAGGGATTCAGCGAAGTGGCTTCGAAACTTCCCTTGCTGGAAGACCTTGACATTTCGAAATGTGATAACATCTCATCTAAATCTCTACAGGTGGTTACGTGCTCATTCCCTCTTTTGAAGTCGTGCAAATTGAATTCACTCAAACTCAATATATCAAGTGAAAGCAGGTGGCTTTGTAAGGTGGATTATTGTCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

22.07

Weight (kDa)

8.36

Isoelectric Point (pI)

60.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	17 - 64	2.5e-10	F-box-like
F-box	PF00646	17 - 57	1.5e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	537
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	2 cut(s)	24, 336
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	290, 317
AfiI	CCNNNNNNNGG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	499, 514
AjiI	CACGTC	2 cut(s)	141, 244
AluBI	AGCT	4 cut(s)	219, 258, 330, 372
AluI	AGCT	4 cut(s)	219, 258, 330, 372
Alw21I	GWGCWC	2 cut(s)	332, 485
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	6
AsuII	TTCGAA	2 cut(s)	404, 437
AvaI	CYCGRG	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	332, 485
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	3 cut(s)	90, 107, 135
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	2 cut(s)	141, 244
BmiI	GGNNCC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	429
Bpu14I	TTCGAA	2 cut(s)	404, 437
BpuEI	CTTGAG	2 cut(s)	296, 316
BsaAI	YACGTR	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	11, 189
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	127, 137, 315
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	332, 485
BsiHKCI	CYCGRG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	2 cut(s)	404, 437
Bsp1286I	GDGCHC	2 cut(s)	332, 485
Bsp143I	GATC	4 cut(s)	108, 231, 250, 301
BspACI	CCGC	2 cut(s)	24, 336
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	3 cut(s)	126, 136, 316
BspLI	GGNNCC	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	103
BspT104I	TTCGAA	2 cut(s)	404, 437
BspT107I	GGYRCC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	108, 231, 250, 301
BssNI	GRCGYC	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	32, 87
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	480
BstBI	TTCGAA	2 cut(s)	404, 437
BstDEI	CTNAG	4 cut(s)	113, 123, 254, 324
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	11, 189
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	4 cut(s)	111, 234, 253, 304
BstMBI	GATC	4 cut(s)	108, 231, 250, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	467
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	108, 231
BstYI	RGATCY	2 cut(s)	108, 231
Bsu36I	CCTNAGG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	28
BtrI	CACGTC	2 cut(s)	141, 244
BtsCI	GGATG	2 cut(s)	11, 189
BveI	ACCTGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	289, 316
CviAII	CATG	4 cut(s)	136, 214, 319, 575
CviQI	GTAC	2 cut(s)	289, 316
DdeI	CTNAG	4 cut(s)	113, 123, 254, 324
DpnI	GATC	4 cut(s)	110, 233, 252, 303
DpnII	GATC	4 cut(s)	108, 231, 250, 301
EaeI	YGGCCR	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	4 cut(s)	139, 217, 322, 578
FaiI	YATR	6 cut(s)	133, 137, 215, 320, 533, 576
FatI	CATG	4 cut(s)	135, 213, 318, 574
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	369
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	36
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	139, 217, 322, 578
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	4 cut(s)	150, 339, 354, 387
Hpy188I	TCNGA	2 cut(s)	126, 353
Hpy188III	TCNNGA	4 cut(s)	15, 106, 115, 358
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	32, 87
HpyCH4IV	ACGT	3 cut(s)	140, 243, 479
HpyCH4V	TGCA	4 cut(s)	135, 156, 366, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	4 cut(s)	113, 123, 254, 324
HpySE526I	ACGT	3 cut(s)	140, 243, 479
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	139, 217, 322, 578
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	108, 231, 250, 301
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	3 cut(s)	140, 243, 479
MaeIII	GTNAC	2 cut(s)	87, 475
MalI	GATC	4 cut(s)	110, 233, 252, 303
MboI	GATC	4 cut(s)	108, 231, 250, 301
MboII	GAAGA	3 cut(s)	30, 159, 434
MflI	RGATCY	2 cut(s)	108, 231
MhlI	GDGCHC	2 cut(s)	332, 485
MluCI	AATT	3 cut(s)	361, 509, 514
MnlI	CCTC	6 cut(s)	120, 122, 320, 359, 376, 501
Mph1103I	ATGCAT	1 cut(s)	137
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	4 cut(s)	108, 231, 250, 301
NlaIII	CATG	4 cut(s)	139, 217, 322, 578
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	87
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	137
NspV	TTCGAA	2 cut(s)	404, 437
PaeR7I	CTCGAG	1 cut(s)	104
PaqCI	CACCTGC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	150, 339, 354, 387
Ppu21I	YACGTR	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	108, 231
RsaI	GTAC	2 cut(s)	290, 317
RsaNI	GTAC	2 cut(s)	289, 316
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	4 cut(s)	108, 231, 250, 301
SduI	GDGCHC	2 cut(s)	332, 485
SfcI	CTRYAG	1 cut(s)	467
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	2 cut(s)	404, 437
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	3 cut(s)	104, 311, 331
SmoI	CTYRAG	3 cut(s)	104, 311, 331
Sse9I	AATT	3 cut(s)	361, 509, 514
SsiI	CCGC	2 cut(s)	24, 336
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	332
TaaI	ACNGT	2 cut(s)	32, 87
TaiI	ACGT	3 cut(s)	143, 246, 482
TaqI	TCGA	5 cut(s)	80, 105, 210, 404, 437
TasI	AATT	3 cut(s)	361, 509, 514
TatI	WGTACW	2 cut(s)	288, 315
TfiI	GAWTC	4 cut(s)	150, 339, 354, 387
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	68
XapI	RAATTY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.