Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

56705812 .. 56706723

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG406100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTCGAGCGGAGGGAGATCTAAAACTGAAAGTGAAATCCCCCTTCCTCACTCCGCAAAGCTCTCTGCCTAATGGGCCTGCTACTATGGACTCTCAGTCTTCTCATCTCTTACTGGAACCTCCTTTTCGCCTCGATTACTCCTCCGTCCAGATCATCACCTCCCTCATTTCAATCCAGGCCCATTTGCAGGCTTACTTCTGGATTGGGCGCTGCGGCGGCCCATGCTCTCTCCGCTCACGCCTTCTTTGTGTAAACTATTATCACCACTTCTCAGAAACAGCCCAGTTCCTTCCCGTATTGCGAATGTCACATCTTTCACACATCCAAGTGTATCTGGGAAGTGCTTTGGCAGAACAAAACGATACCCCATATGCTCATGTCTACGAGTGCATTGACAAGTTCACACAGTGCTGG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.73

Weight (kDa)

7.03

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	11, 237
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	5 cut(s)	11, 56, 216, 219, 235
AdeI	CACNNNGTG	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	174
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	77, 180, 220
ApeKI	GCWGC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	77, 181, 221
AsuHPI	GGTGA	2 cut(s)	151, 257
AvaI	CYCGRG	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	3 cut(s)	214, 217, 220
BlsI	GCNGC	3 cut(s)	215, 218, 221
Bme1390I	CCNGG	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	77, 181, 221
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	179
BmrI	ACTGGG	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	120, 286
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	110, 288
BseNI	ACTGG	2 cut(s)	120, 286
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	3 cut(s)	79, 182, 222
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	190
BsnI	GGCC	3 cut(s)	79, 182, 222
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	19, 153
BspACI	CCGC	5 cut(s)	11, 56, 216, 219, 235
BspANI	GGCC	3 cut(s)	79, 182, 222
BspCNI	CTCAG	2 cut(s)	109, 287
BspLI	GGNNCC	1 cut(s)	120
BsrBI	CCGCTC	2 cut(s)	11, 237
BsrI	ACTGG	2 cut(s)	120, 286
BssMI	GATC	2 cut(s)	19, 153
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	81, 192
BstDEI	CTNAG	2 cut(s)	96, 274
BstF5I	GGATG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	22, 156
BstMBI	GATC	2 cut(s)	19, 153
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 219, 225, 234
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	79, 182, 222
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	81, 192
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	77, 181, 221
CviAII	CATG	2 cut(s)	225, 380
CviJI	RGCY	7 cut(s)	5, 63, 79, 182, 194, 222, 284
CviKI_1	RGCY	7 cut(s)	5, 63, 79, 182, 194, 222, 284
DdeI	CTNAG	2 cut(s)	96, 274
DpnI	GATC	2 cut(s)	21, 155
DpnII	GATC	2 cut(s)	19, 153
DraIII	CACNNNGTG	1 cut(s)	411
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	228, 383
FaiI	YATR	5 cut(s)	89, 226, 373, 375, 381
FatI	CATG	2 cut(s)	224, 379
FauNDI	CATATG	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	214, 217, 220
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	214, 217, 220
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	214, 217, 220
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	79, 182, 222
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	228, 383
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	151, 257
Hpy166II	GTNNAC	3 cut(s)	256, 385, 405
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	151, 202
Hpy8I	GTNNAC	3 cut(s)	256, 385, 405
HpyAV	CCTTC	3 cut(s)	55, 254, 302
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	190, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 219, 225, 234
HpyF3I	CTNAG	2 cut(s)	96, 274
Hsp92II	CATG	2 cut(s)	228, 383
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	19, 153
Lsp1109I	GCAGC	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	2 cut(s)	21, 155
MbiI	CCGCTC	2 cut(s)	11, 237
MboI	GATC	2 cut(s)	19, 153
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	7 cut(s)	7, 59, 132, 143, 154, 172, 176
MslI	CAYNNNNRTG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	76, 219, 225, 234
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	19, 153
NlaIII	CATG	2 cut(s)	228, 383
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	215, 218, 221
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	77, 181, 221
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	329
SatI	GCNGC	3 cut(s)	214, 217, 220
Sau3AI	GATC	2 cut(s)	19, 153
Sau96I	GGNCC	3 cut(s)	77, 181, 221
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	3 cut(s)	65, 124, 164
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	5 cut(s)	11, 56, 216, 219, 235
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	7, 135
TauI	GCSGC	2 cut(s)	219, 222
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	6
XmiI	GTMKAC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.