Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026078.1

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

9574 .. 10071

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026078.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggctcgagcggagggagatctaaaactgaaagtgaaatcccccttcctcactccgcaaagctctctgcctaatgggcctgctactatggactctcagtcttctcatctcttactggaacctccttttcgcctcgattactcctccttccagatcatcacctccctcatttcaatccaggcccatttgcaggctacttctggattgggcgctgcggcggcccatgatctctccgctcacgccttctttgtggttcttgttggacgctcatctcacttgttagaaaaggtacctaatctcctcggctttcaaatttccgactcacaaatgcactcttcaatccaactcctaattaacagtgctggaatatttgctacatcgtctacattcacctccgaagtctatgatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

137

Amino Acids

14.7

Weight (kDa)

6.0

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	2 cut(s)	11, 236
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	5 cut(s)	11, 56, 215, 218, 234
AcsI	RAATTY	1 cut(s)	312
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	174, 311, 339
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	77, 180, 219
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	312
Asp718I	GGTACC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	3 cut(s)	77, 181, 220
AsuHPI	GGTGA	2 cut(s)	151, 382
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	3 cut(s)	213, 216, 219
BlsI	GCNGC	3 cut(s)	214, 217, 220
Bme1390I	CCNGG	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	77, 181, 220
BmiI	GGNNCC	2 cut(s)	120, 291
BmrFI	CCNGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	133, 290
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	79, 182, 221
BshNI	GGYRCC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	190
BsnI	GGCC	3 cut(s)	79, 182, 221
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	19, 153, 226, 406
BspACI	CCGC	5 cut(s)	11, 56, 215, 218, 234
BspANI	GGCC	3 cut(s)	79, 182, 221
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	120, 291
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	2 cut(s)	11, 236
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	19, 153, 226, 406
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	81, 192
BstDEI	CTNAG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	4 cut(s)	22, 156, 229, 409
BstMBI	GATC	4 cut(s)	19, 153, 226, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 218
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	79, 182, 221
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	81, 192
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	77, 181, 220
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	7 cut(s)	5, 63, 79, 182, 194, 221, 306
CviKI_1	RGCY	7 cut(s)	5, 63, 79, 182, 194, 221, 306
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	4 cut(s)	21, 155, 228, 408
DpnII	GATC	4 cut(s)	19, 153, 226, 406
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	89, 225, 405
FatI	CATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	213, 216, 219
Fsp4HI	GCNGC	3 cut(s)	213, 216, 219
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	213, 216, 219
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	79, 182, 221
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	92, 320
HphI	GGTGA	2 cut(s)	151, 382
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	2 cut(s)	319, 397
Hpy188III	TCNNGA	2 cut(s)	151, 201
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	3 cut(s)	55, 157, 253
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	2 cut(s)	190, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 218
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	210
KpnI	GGTACC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	19, 153, 226, 406
LpnPI	CCDG	8 cut(s)	93, 101, 164, 164, 176, 186, 191, 348
Lsp1109I	GCAGC	1 cut(s)	199
MalI	GATC	4 cut(s)	21, 155, 228, 408
MbiI	CCGCTC	2 cut(s)	11, 236
MboI	GATC	4 cut(s)	19, 153, 226, 406
MboII	GAAGA	2 cut(s)	93, 327
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	2 cut(s)	312, 351
MlyI	GAGTC	2 cut(s)	86, 314
MmeI	TCCRAC	3 cut(s)	241, 342, 367
MnlI	CCTC	9 cut(s)	7, 59, 132, 143, 154, 172, 176, 311, 403
MseI	TTAA	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	76, 218
NdeII	GATC	4 cut(s)	19, 153, 226, 406
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	2 cut(s)	120, 291
NmeAIII	GCCGAG	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	214, 217, 220
PleI	GAGTC	2 cut(s)	86, 314
PpsI	GAGTC	2 cut(s)	86, 314
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	120, 291
PspPI	GGNCC	3 cut(s)	77, 181, 220
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	213, 216, 219
Sau3AI	GATC	4 cut(s)	19, 153, 226, 406
Sau96I	GGNCC	3 cut(s)	77, 181, 220
SchI	GAGTC	2 cut(s)	86, 314
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	6 cut(s)	65, 124, 164, 291, 295, 395
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	2 cut(s)	312, 351
SsiI	CCGC	5 cut(s)	11, 56, 215, 218, 234
SspI	AATATT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	7, 135
TasI	AATT	2 cut(s)	312, 351
TauI	GCSGC	2 cut(s)	218, 221
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	212
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	312
XhoI	CTCGAG	1 cut(s)	6
XmiI	GTMKAC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.