RchiOBHm_Chr7g0229791

Dehydrogenase reductase SDR family member on chromosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005207
Physical Location & Seq
Forward (+)
53342961 .. 53344630
1670 bp
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UTR
Exon/CDS
Intron
PRQ20587

Sequence Viewer

Length: 351 bp
ATGCTGGAATATTTGCTACATCGTCTACATTCACCGCCGAAGGCTATGATCATGTTCCTACTGCTCTTCTCTTATGAGCTTCATCACCAACTTGGCTTGATGGACATATCTCGTCATGTCTCCGTAATTACTGTGGATCCTGGTGTTGTTGAAAGCAACATCATGCGAGAAGTTCCTCCATGCCTATGCAGTTTGGCTTTCAAAGTTTTGAGACGTCTGTGCCTCTTGCAGTCACCTGAAGTTGGAATTAGCTCCATTCTTGACTCCGCACTTGCTCCACCGGAAACATCTGGAGTTTACTTTTTTTGGTGGAAAGGGCCAGACTGTCAGCTCTTCTATGCTTTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

116

Amino Acids

13.24

Weight (kDa)

6.16

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 25
AciI CCGC 2 cut(s) 35, 267
AclWI GGATC 2 cut(s) 131, 144
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 152, 202
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 3 cut(s) 79, 252, 331
AluI AGCT 3 cut(s) 79, 252, 331
Alw26I GTCTC 2 cut(s) 124, 205
AlwI GGATC 2 cut(s) 131, 144
AoxI GGCC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 24, 77, 225
BamHI GGATCC 1 cut(s) 136
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 124, 205
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 242
BshFI GGCC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 124, 205
BsmBI CGTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 48, 136
BspACI CCGC 2 cut(s) 35, 267
BspANI GGCC 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 2 cut(s) 131, 144
BspQI GCTCTTC 2 cut(s) 71, 338
BssMI GATC 2 cut(s) 48, 136
BssNI GRCGYC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 133, 326
Bst6I CTCTTC 2 cut(s) 71, 338
BstACI GRCGYC 1 cut(s) 214
BstKTI GATC 2 cut(s) 51, 139
BstMAI GTCTC 2 cut(s) 124, 205
BstMBI GATC 2 cut(s) 48, 136
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 4 cut(s) 52, 116, 163, 180
CviJI RGCY 7 cut(s) 44, 79, 96, 197, 252, 319, 331
CviKI_1 RGCY 7 cut(s) 44, 79, 96, 197, 252, 319, 331
DpnI GATC 2 cut(s) 50, 138
DpnII GATC 2 cut(s) 48, 136
Eam1104I CTCTTC 2 cut(s) 71, 338
EarI CTCTTC 2 cut(s) 71, 338
Eco57I CTGAAG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 4 cut(s) 55, 119, 166, 183
FatI CATG 4 cut(s) 51, 115, 162, 179
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 4 cut(s) 55, 119, 166, 183
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 281
HphI GGTGA 3 cut(s) 24, 77, 225
Hpy166II GTNNAC 2 cut(s) 26, 298
Hpy188III TCNNGA 2 cut(s) 260, 291
Hpy8I GTNNAC 2 cut(s) 26, 298
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 133, 326
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 189, 229
HpySE526I ACGT 1 cut(s) 214
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 4 cut(s) 55, 119, 166, 183
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 136
LguI GCTCTTC 2 cut(s) 71, 338
LmnI GCTCC 2 cut(s) 257, 280
LpnPI CCDG 6 cut(s) 126, 153, 249, 276, 294, 333
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 50, 138
MboI GATC 2 cut(s) 48, 136
MboII GAAGA 2 cut(s) 58, 325
MflI RGATCY 1 cut(s) 136
MluCI AATT 2 cut(s) 126, 246
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 186, 233
MslI CAYNNNNRTG 1 cut(s) 184
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NdeII GATC 2 cut(s) 48, 136
NlaIII CATG 4 cut(s) 55, 119, 166, 183
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 231
PciSI GCTCTTC 2 cut(s) 71, 338
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 184
SapI GCTCTTC 2 cut(s) 71, 338
Sau3AI GATC 2 cut(s) 48, 136
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 141
SetI ASST 5 cut(s) 81, 217, 238, 254, 333
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 2 cut(s) 126, 246
SsiI CCGC 2 cut(s) 35, 267
SspI AATATT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 133, 326
TaiI ACGT 1 cut(s) 217
TasI AATT 2 cut(s) 126, 246
TseFI GTSAC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 25
ZraI GACGTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.