Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

53541723 .. 53543386

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGGAGGCTTTGGATTTTGTACTGTCCATGGAATTCTGGAGAATGGGCCTGCTATGGACTCTCAGCCTTCTCATCCCTTACTGGAACCTCCTTTTCGCCTCGACTACTCCTCCTTCCAGATCATCACCTCCCTCATTTCAATCCTCTGCATCGTCACCGGTGTTACTTCTTGATTGGGTGCTGCGGCGGCCATGCTCTCTCCGCTCATGGCTTCTTTGTGTTGAACGCTTATCTCACTTGTTAGAAAAGACGATGATGGAAATTAAGAGGAAGAATGAGAGTGCGCATCTGAAAGCCTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCAGTTTAAAGCCTCCCTACAGCAGTGGCTTTCCCACTTGCAAATGCACCCTTCAATCCAACTCCTAATTAACGATGCTGGAATATTTGCTGCATCGTCTACATGCACCTCCGAAGTCTATGATCGTCCAGTTTCTTCCCGTATAGTGAATGTCACATCTTTCACACATGGAAGTGGTGAATCAAAAGGAAACCCATATGCTCATGTCTACGAGTATTCCAAATGTAAGCTCCTGATGTCATTATTATTGAAAATATCCTATTGCTATTCCAATTTCAATGTGCTCCATGTGTTGACATTGTTCCTACTGCGCTTCTCCTATGAGCTTCATCACCAACTTGGCTTGATGGACATATCTTGTCATGTCTCCATTATTTTTGTGTTTACAAGCTTTTTTACCAGAAAGGAAGAGTTGTGCAGAATTCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

255

Amino Acids

29.42

Weight (kDa)

8.66

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	434, 543
AciI	CCGC	3 cut(s)	187, 190, 205
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	2 cut(s)	35, 756
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	24
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	143, 227, 390, 586, 613
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	565, 661, 726
AluI	AGCT	3 cut(s)	565, 661, 726
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	706
AoxI	GGCC	2 cut(s)	49, 191
ApeKI	GCWGC	2 cut(s)	184, 425
ApoI	RAATTY	2 cut(s)	35, 756
AsiGI	ACCGGT	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	289, 648
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	4 cut(s)	120, 150, 524, 659
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	171, 412
BccI	CCATC	2 cut(s)	253, 676
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	1 cut(s)	766
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	4 cut(s)	185, 188, 191, 426
BlsI	GCNGC	4 cut(s)	186, 189, 192, 427
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	4 cut(s)	161, 298, 400, 437
BpmI	CTGGAG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	89, 325, 464
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	3 cut(s)	89, 325, 464
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	171, 412
BshFI	GGCC	2 cut(s)	51, 193
BshTI	ACCGGT	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	51, 193
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	122, 310, 457
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	3 cut(s)	187, 190, 205
BspANI	GGCC	2 cut(s)	51, 193
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	89, 325, 464
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	122, 310, 457
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	289, 648
BstKTI	GATC	3 cut(s)	125, 313, 460
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	3 cut(s)	122, 310, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 204
BstNSI	RCATGY	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	171, 412
BsuRI	GGCC	2 cut(s)	51, 193
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	2 cut(s)	289, 648
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	23
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	8 cut(s)	31, 195, 210, 438, 503, 539, 623, 698
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	124, 312, 459
DpnII	GATC	3 cut(s)	122, 310, 457
DraI	TTTAAA	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	320
EcoRI	GAATTC	2 cut(s)	35, 756
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	8 cut(s)	34, 198, 213, 441, 506, 542, 626, 701
FatI	CATG	8 cut(s)	30, 194, 209, 437, 502, 538, 622, 697
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	2 cut(s)	434, 543
Fnu4HI	GCNGC	4 cut(s)	185, 188, 191, 426
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	4 cut(s)	185, 188, 191, 426
FspAI	RTGCGCAY	1 cut(s)	288
FspBI	CTAG	1 cut(s)	766
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	2 cut(s)	288, 647
GluI	GCNGC	4 cut(s)	185, 188, 191, 426
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	51, 193
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	2 cut(s)	289, 648
Hin1II	CATG	8 cut(s)	34, 198, 213, 441, 506, 542, 626, 701
Hin6I	GCGC	2 cut(s)	287, 646
HinP1I	GCGC	2 cut(s)	287, 646
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	724
HinfI	GANTC	3 cut(s)	61, 331, 515
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	4 cut(s)	120, 150, 524, 659
Hpy166II	GTNNAC	4 cut(s)	435, 544, 630, 720
Hpy188I	TCNGA	2 cut(s)	294, 448
Hpy188III	TCNNGA	4 cut(s)	40, 120, 173, 568
Hpy8I	GTNNAC	4 cut(s)	435, 544, 630, 720
HpyAV	CCTTC	4 cut(s)	80, 126, 310, 396
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	6 cut(s)	152, 376, 382, 428, 441, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 204
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	8 cut(s)	34, 198, 213, 441, 506, 542, 626, 701
HspAI	GCGC	2 cut(s)	287, 646
Kzo9I	GATC	3 cut(s)	122, 310, 457
LmnI	GCTCC	2 cut(s)	570, 624
Lsp1109I	GCAGC	2 cut(s)	171, 412
LweI	GCATC	4 cut(s)	161, 298, 400, 437
MaeI	CTAG	1 cut(s)	766
MaeIII	GTNAC	3 cut(s)	156, 165, 487
MalI	GATC	3 cut(s)	124, 312, 459
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	3 cut(s)	122, 310, 457
MboII	GAAGA	4 cut(s)	286, 326, 462, 755
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	5 cut(s)	35, 264, 402, 607, 756
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	3 cut(s)	267, 342, 405
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	190, 204
NcoI	CCATGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	3 cut(s)	122, 310, 457
NlaIII	CATG	8 cut(s)	34, 198, 213, 441, 506, 542, 626, 701
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	2 cut(s)	156, 487
NsbI	TGCGCA	1 cut(s)	288
NspI	RCATGY	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	331, 515
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	186, 189, 192, 427
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	267, 342, 405
SatI	GCNGC	4 cut(s)	185, 188, 191, 426
Sau3AI	GATC	3 cut(s)	122, 310, 457
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	7 cut(s)	93, 133, 309, 446, 567, 663, 728
SfaNI	GCATC	4 cut(s)	161, 298, 400, 437
SfcI	CTRYAG	1 cut(s)	353
SgrAI	CRCCGGYG	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	5 cut(s)	35, 264, 402, 607, 756
SsiI	CCGC	3 cut(s)	187, 190, 205
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	104, 303, 329
TasI	AATT	5 cut(s)	35, 264, 402, 607, 756
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	2 cut(s)	190, 193
TfiI	GAWTC	2 cut(s)	331, 515
Tru1I	TTAA	3 cut(s)	267, 342, 405
Tru9I	TTAA	3 cut(s)	267, 342, 405
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	2 cut(s)	156, 487
TseI	GCWGC	2 cut(s)	184, 425
Tsp45I	GTSAC	2 cut(s)	156, 487
TspDTI	ATGAA	2 cut(s)	17, 653
TspRI	CASTG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	35, 756
XceI	RCATGY	1 cut(s)	441
XmiI	GTMKAC	2 cut(s)	434, 543
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.