Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Reverse (-)

53855236 .. 53856112

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG376400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAATTCTGGAGAATGGGCCTGCGATGGACTCTCAGTCTTCTCATCTCTTACTGGCACCTCCTCTTCGCCTCGACTACTACTCCTCCTTCCAGATCACCGCCTCCCTCATCTCCGTCGAGGCCCGTCTGCATCATCACCGGTGCGACTTCTGGATTGGGCGCCGCCGCGGCTCATGCTCTCTCCGCTAGTGGCTTCTTTGTGGTTCTCGTTGGACGCTCATCTCGCTTGTTAGAAAAGACGATGATGGAAATTAAGAGGAAGAATGAGAGTGCACAGCTGAAAGCTTTCGAGGTTGATCTCTCATCATTCCAGTCGATTCTTCGGTTTAAAGCCTCCCTACAGCAGTGGCTTTCCGACTCGCAAATGCACTCTTCGATCCAACTCCTAATTAACAACGCTGGAATACTTGCTACGTCGTCTAGATTCACGTCTGAAGGCTATGATCAGATGATGGCTACAAATGTGCATTTTTTCTTAGTAAACTATTGTTACCGCTTCTCAGAAACAGCTCGATTCCTTCCCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

176

Amino Acids

19.65

Weight (kDa)

9.75

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	43 - 157	1.8e-17	short chain dehydrogenase
adh_short_C2	PF13561	48 - 157	1.2e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	57, 161
AccII	CGCG	1 cut(s)	170
AciI	CCGC	7 cut(s)	101, 165, 168, 170, 186, 496, 525
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	456
AcyI	GRCGYC	1 cut(s)	162
AgeI	ACCGGT	1 cut(s)	140
AhdI	GACNNNNNGTC	1 cut(s)	36
AjiI	CACGTC	1 cut(s)	432
AluBI	AGCT	3 cut(s)	280, 287, 512
AluI	AGCT	3 cut(s)	280, 287, 512
Alw21I	GWGCWC	1 cut(s)	277
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	19, 122
ApaLI	GTGCAC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	19, 123
AsuHPI	GGTGA	2 cut(s)	90, 130
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	2 cut(s)	57, 161
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	277
BccI	CCATC	3 cut(s)	21, 241, 448
BclI	TGATCA	1 cut(s)	445
BfaI	CTAG	2 cut(s)	189, 423
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	165, 168, 171
BlsI	GCNGC	3 cut(s)	166, 169, 172
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	19, 123
BmiI	GGNNCC	2 cut(s)	59, 163
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 70, 97, 100
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	59, 313
BseDI	CCNNGG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	49, 516
BseNI	ACTGG	2 cut(s)	59, 313
BseRI	GAGGAG	2 cut(s)	53, 75
BseSI	GKGCMC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	21, 124
BshNI	GGYRCC	2 cut(s)	57, 161
BshTI	ACCGGT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	141
BsnI	GGCC	2 cut(s)	21, 124
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	95, 298, 378, 445
BspACI	CCGC	7 cut(s)	101, 165, 168, 170, 186, 496, 525
BspANI	GGCC	2 cut(s)	21, 124
BspCNI	CTCAG	2 cut(s)	48, 515
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	59, 163
BspPI	GGATC	1 cut(s)	373
BspT107I	GGYRCC	2 cut(s)	57, 161
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	59, 313
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	4 cut(s)	95, 298, 378, 445
BssNI	GRCGYC	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	71, 379
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	35, 478, 502
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	4 cut(s)	98, 301, 381, 448
BstMBI	GATC	4 cut(s)	95, 298, 378, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 176, 185, 225
BstSFI	CTRYAG	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	21, 124
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	432
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	19, 123
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	225
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	1 cut(s)	176
DdeI	CTNAG	3 cut(s)	35, 478, 502
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	4 cut(s)	97, 300, 380, 447
DpnII	GATC	4 cut(s)	95, 298, 378, 445
DraI	TTTAAA	1 cut(s)	331
DriI	GACNNNNNGTC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	71, 379
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	2 cut(s)	71, 379
Eco57I	CTGAAG	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	177, 444, 529
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	165, 168, 171
Fsp4HI	GCNGC	3 cut(s)	165, 168, 171
FspBI	CTAG	2 cut(s)	189, 423
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	165, 168, 171
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	21, 124
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	5 cut(s)	31, 319, 359, 426, 516
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	90, 130
Hpy166II	GTNNAC	2 cut(s)	275, 484
Hpy188I	TCNGA	4 cut(s)	358, 436, 450, 505
Hpy188III	TCNNGA	4 cut(s)	10, 93, 153, 423
Hpy8I	GTNNAC	2 cut(s)	275, 484
Hpy99I	CGWCG	2 cut(s)	121, 421
HpyAV	CCTTC	3 cut(s)	99, 431, 530
HpyCH4IV	ACGT	2 cut(s)	416, 431
HpyCH4V	TGCA	4 cut(s)	132, 275, 370, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 176, 185, 225
HpyF3I	CTNAG	3 cut(s)	35, 478, 502
HpySE526I	ACGT	2 cut(s)	416, 431
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	445
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	95, 298, 378, 445
LpnPI	CCDG	7 cut(s)	35, 40, 106, 138, 154, 326, 387
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	189, 423
MaeII	ACGT	2 cut(s)	416, 431
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	97, 300, 380, 447
MboI	GATC	4 cut(s)	95, 298, 378, 445
MboII	GAAGA	5 cut(s)	32, 58, 274, 314, 366
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	3 cut(s)	5, 252, 390
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	25, 353
MmeI	TCCRAC	3 cut(s)	193, 381, 406
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	3 cut(s)	255, 330, 393
MspA1I	CMGCKG	2 cut(s)	170, 280
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	170, 176, 185, 225
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	4 cut(s)	95, 298, 378, 445
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	59, 163
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	319, 426, 516
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	166, 169, 172
PleI	GAGTC	2 cut(s)	25, 353
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	2 cut(s)	25, 353
PspN4I	GGNNCC	2 cut(s)	59, 163
PspPI	GGNCC	2 cut(s)	19, 123
PvuII	CAGCTG	1 cut(s)	280
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	255, 330, 393
SatI	GCNGC	3 cut(s)	165, 168, 171
Sau3AI	GATC	4 cut(s)	95, 298, 378, 445
Sau96I	GGNCC	2 cut(s)	19, 123
SchI	GAGTC	2 cut(s)	25, 353
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	7 cut(s)	63, 282, 289, 297, 419, 434, 514
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	341
SfoI	GGCGCC	1 cut(s)	163
Sfr303I	CCGCGG	1 cut(s)	171
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	5, 252, 390
SsiI	CCGC	7 cut(s)	101, 165, 168, 170, 186, 496, 525
SspDI	GGCGCC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	189, 423
TaiI	ACGT	2 cut(s)	419, 434
TaqI	TCGA	6 cut(s)	74, 119, 291, 317, 377, 514
TasI	AATT	3 cut(s)	5, 252, 390
TauI	GCSGC	3 cut(s)	167, 170, 173
TfiI	GAWTC	3 cut(s)	319, 426, 516
Tru1I	TTAA	3 cut(s)	255, 330, 393
Tru9I	TTAA	3 cut(s)	255, 330, 393
TscAI	CASTG	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	5
XbaI	TCTAGA	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	2 cut(s)	189, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.