Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

54549940 .. 54554484

Gene Structure 4545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG408600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTCGAGCGGAGGGAGATCTAAAACTGAAAGTGAAATCCGCCTTCCTCACTCCGCAAAGCTCTCTGCCTCACTCTCCTATTATGGAGAATGGGCCTGCTACTATGGACTCTCAGTCTTCTCATCTCTTACTGGAACCTCCTTTTCGCCTCGATTACTCCTCCTTCCAGATCATCACCTCCCTCATTTCAATCCAGGTCCATTTGCAGGCTACTTCTGGATTGGGCGCTGCGGCGGCCCATGCTCTCTCCGCTCACGCCTTCTTTGTGGTTCTTGAGAAGCAATGTCAGGCCCTCAGTGCTGTTTTTACTCGCCAGTTATCAACACAAGCTGTGGGTCAGACTGTGCTGAAAAATTTGGAGGTTGATAGCTACGTGAAGATATTTCCAAAAGTTGCACATGGTTGGGCTGTGAGGTACGATGTTGATAATGAAGGAGCTGCAAAGAGTGCAGAGGAAGCTCATAATGACATGTTGCAGGGGTTTGCTAAGCATGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

167

Amino Acids

18.1

Weight (kDa)

6.22

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	11, 254
AciI	CCGC	6 cut(s)	11, 42, 56, 233, 236, 252
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	192
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	5 cut(s)	63, 332, 372, 440, 461
AluI	AGCT	5 cut(s)	63, 332, 372, 440, 461
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	95, 237, 291
ApeKI	GCWGC	2 cut(s)	230, 440
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	4 cut(s)	95, 199, 238, 292
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	217, 427
BciT130I	CCWGG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	231
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	231, 234, 237, 441
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	4 cut(s)	232, 235, 238, 442
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	4 cut(s)	95, 199, 238, 292
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	138, 316
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	128, 310
BseNI	ACTGG	2 cut(s)	138, 316
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	217, 427
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	97, 239, 293
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	208
BsnI	GGCC	3 cut(s)	97, 239, 293
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	19, 171
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	6 cut(s)	11, 42, 56, 233, 236, 252
BspANI	GGCC	3 cut(s)	97, 239, 293
BspCNI	CTCAG	2 cut(s)	127, 309
BspLI	GGNNCC	1 cut(s)	138
BsrBI	CCGCTC	2 cut(s)	11, 254
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	138, 316
BssMI	GATC	2 cut(s)	19, 171
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	99, 210
BstDEI	CTNAG	3 cut(s)	114, 296, 489
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	22, 174
BstMBI	GATC	2 cut(s)	19, 171
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 242, 251, 299, 449, 458
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	475, 497
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	217, 427
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	97, 239, 293
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	99, 210
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	4 cut(s)	95, 199, 238, 292
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	4 cut(s)	242, 401, 472, 494
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	114, 296, 489
DpnI	GATC	2 cut(s)	21, 173
DpnII	GATC	2 cut(s)	19, 171
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	4 cut(s)	245, 404, 475, 497
FaiI	YATR	7 cut(s)	86, 107, 243, 402, 465, 473, 495
FatI	CATG	4 cut(s)	241, 400, 471, 493
Fnu4HI	GCNGC	4 cut(s)	231, 234, 237, 441
Fsp4HI	GCNGC	4 cut(s)	231, 234, 237, 441
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	4 cut(s)	231, 234, 237, 441
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	97, 239, 293
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	245, 404, 475, 497
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	3 cut(s)	169, 219, 275
HpyAV	CCTTC	4 cut(s)	55, 175, 271, 428
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	5 cut(s)	208, 398, 443, 452, 478
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 242, 251, 299, 449, 458
HpyF3I	CTNAG	3 cut(s)	114, 296, 489
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	245, 404, 475, 497
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	19, 171
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	2 cut(s)	217, 427
MaeII	ACGT	1 cut(s)	375
MalI	GATC	2 cut(s)	21, 173
MbiI	CCGCTC	2 cut(s)	11, 254
MboI	GATC	2 cut(s)	19, 171
MboII	GAAGA	2 cut(s)	111, 391
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	6 cut(s)	236, 242, 251, 299, 449, 458
NdeII	GATC	2 cut(s)	19, 171
NlaIII	CATG	4 cut(s)	245, 404, 475, 497
NlaIV	GGNNCC	1 cut(s)	138
NspI	RCATGY	2 cut(s)	475, 497
PaeR7I	CTCGAG	1 cut(s)	6
PciI	ACATGT	1 cut(s)	471
PkrI	GCNGC	4 cut(s)	232, 235, 238, 442
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	376
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	4 cut(s)	95, 199, 238, 292
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SatI	GCNGC	4 cut(s)	231, 234, 237, 441
Sau3AI	GATC	2 cut(s)	19, 171
Sau96I	GGNCC	4 cut(s)	95, 199, 238, 292
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	197
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	6, 275
SmoI	CTYRAG	2 cut(s)	6, 275
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	6 cut(s)	11, 42, 56, 233, 236, 252
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	7, 153
TasI	AATT	1 cut(s)	355
TauI	GCSGC	2 cut(s)	236, 239
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	2 cut(s)	230, 440
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	2 cut(s)	475, 497
XhoI	CTCGAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.