Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005207

Physical Location & Seq

Genomic Coordinates Forward (+)

55737788 .. 55745312

Gene Structure 7525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCGAGAAGTTCCTCCATGCCTATCCAGTTTGGCTTTCGAAGTTTTGAGACTCCTGTGCCTCTTGCAGTCACCTGAAGTGGGAATTAGCTCCATTCTCAATGCCGCACTGTTTAAGGAACAAGTAGTTGAAGGATCAAATACAGTTGGAGATGAAGATGCGTTCGCAATGCCGGAAGACCTACTTTCTTCAACTGATTTGAGGAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

70

Amino Acids

7.61

Weight (kDa)

4.25

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340761 RchiOBHm_Chr5g0016751 RchiOBHm_Chr7g0222771 RchiOBHm_Chr7g0229791 RchiOBHm_Chr7g0230051 RchiOBHm_Chr7g0230151
rosa_laevigata	RLG00000001515 RLG00000001518 RLG00000029042
rosa_multiflora	Rmu_sc0001621.1_g000007 Rmu_sc0006671.1_g000001 Rmu_sc0026078.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311380 Rroxscaffold_7G00156350
rosa_rugosa	Rorug02G0279300 Rorug05G0117200
rosa_samantha	Rh1AG176900 Rh1CG164300 Rh2DG376400 Rh5AG177200 Rh5CG138800 Rh7AG408600 Rh7CG427300 Rh7DG403800 Rh7DG403900 Rh7DG404300 Rh7DG405000 Rh7DG405500 Rh7DG406100
rosa_wichuraiana	Rw7G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	131, 192
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	111, 145
BstBI	TTCGAA	1 cut(s)	39
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	107
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	2 cut(s)	35, 90
CviKI_1	RGCY	2 cut(s)	35, 90
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	96
FaeI	CATG	1 cut(s)	21
FaiI	YATR	1 cut(s)	19
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	1 cut(s)	21
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	111, 145
HpyCH4V	TGCA	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	4 cut(s)	40, 68, 87, 186
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	3 cut(s)	167, 180, 188
MluCI	AATT	2 cut(s)	84, 206
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	24, 71, 195
MseI	TTAA	1 cut(s)	114
MspI	CCGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	45
SetI	ASST	3 cut(s)	76, 92, 183
SfaNI	GCATC	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	39
SgeI	CNNG	8 cut(s)	17, 30, 39, 67, 76, 86, 134, 185
Sse9I	AATT	2 cut(s)	84, 206
SsiI	CCGC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	111, 145
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	84, 206
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.