Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

11847505 .. 11850243

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAAACCCAGAGACCGGGTCTCGACGGTGGACGACGGCGGCATGGCGGGCGGAAGCTTTATCGCTTCTCTATCTCCTCGAACAATGGTCTTGGTCTCTCCACATCACTCGAGATCTCGGTCTCTCCTCGTCGTCTCTCTCCCAAGTCTCAATATCTCCTCGACGGCTCCGGCCCTCTCCTTCTCTCCTCAACTATCGAAGGTCTTTTTCATCCTCGTAAGCCGACAGCTCTAATCGAAAGCAGAGAAATGGAGCAGATCCAGTTCAATCCTGGAGGTCTCTCTTTTTATCTTTTATCCTTTCTTCTCTTTCAATTCATATATCATTTAATTGTTTGTTATGCTGCAATTTGCGAACACCCAGAACGAGAAATTGGTCCAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

9.56

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	40, 48, 52
AclWI	GGATC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	268, 314
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	58, 230
AluI	AGCT	2 cut(s)	58, 230
Alw26I	GTCTC	7 cut(s)	7, 26, 101, 127, 140, 153, 284
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	173, 377
AsuC2I	CCSGG	1 cut(s)	18
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	331
BceAI	ACGGC	2 cut(s)	53, 181
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	7 cut(s)	7, 26, 101, 127, 140, 153, 284
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	2 cut(s)	41, 345
BlsI	GCNGC	2 cut(s)	42, 346
Bme1390I	CCNGG	2 cut(s)	18, 273
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	173, 377
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	18, 273
BpmI	CTGGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	18
BsaI	GGTCTC	5 cut(s)	7, 26, 101, 127, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	4 cut(s)	67, 117, 149, 178
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	17, 171
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	7 cut(s)	7, 26, 101, 127, 140, 153, 284
BsmBI	CGTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	5 cut(s)	7, 26, 101, 127, 284
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	114, 258
BspACI	CCGC	3 cut(s)	40, 48, 52
BspANI	GGCC	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	253
BspTNI	GGTCTC	5 cut(s)	7, 26, 101, 127, 284
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	114, 258
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	117, 261
BstMAI	GTCTC	7 cut(s)	7, 26, 101, 127, 140, 153, 284
BstMBI	GATC	2 cut(s)	114, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	16, 271
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	114, 258
BstYI	RGATCY	2 cut(s)	114, 258
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	173, 377
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	58, 168, 174, 223, 230
CviKI_1	RGCY	5 cut(s)	58, 168, 174, 223, 230
DpnI	GATC	2 cut(s)	116, 260
DpnII	GATC	2 cut(s)	114, 258
EciI	GGCGGA	1 cut(s)	67
Eco31I	GGTCTC	5 cut(s)	7, 26, 101, 127, 284
Eco47I	GGWCC	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	47
FaiI	YATR	4 cut(s)	45, 320, 322, 342
FatI	CATG	1 cut(s)	43
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	41, 345
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	41, 345
GluI	GCNGC	2 cut(s)	41, 345
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	17, 171
Hin1II	CATG	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	56
HpaII	CCGG	2 cut(s)	17, 171
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188III	TCNNGA	2 cut(s)	23, 112
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	4 cut(s)	29, 39, 135, 167
HpyAV	CCTTC	2 cut(s)	191, 194
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	114, 258
LmnI	GCTCC	2 cut(s)	173, 253
LpnPI	CCDG	7 cut(s)	23, 30, 184, 258, 275, 285, 375
Lsp1109I	GCAGC	1 cut(s)	331
MaeII	ACGT	1 cut(s)	383
MalI	GATC	2 cut(s)	116, 260
MboI	GATC	2 cut(s)	114, 258
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	2 cut(s)	114, 258
MluCI	AATT	4 cut(s)	314, 330, 348, 372
MnlI	CCTC	7 cut(s)	88, 138, 170, 186, 199, 225, 269
MseI	TTAA	1 cut(s)	329
MspI	CCGG	2 cut(s)	17, 171
MspR9I	CCNGG	2 cut(s)	18, 273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	49
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	114, 258
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	42, 346
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	173, 377
PsuI	RGATCY	2 cut(s)	114, 258
PsyI	GACNNNGTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	41, 345
Sau3AI	GATC	2 cut(s)	114, 258
Sau96I	GGNCC	2 cut(s)	173, 377
ScrFI	CCNGG	2 cut(s)	18, 273
SetI	ASST	5 cut(s)	60, 205, 232, 280, 386
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	314, 330, 348, 372
SsiI	CCGC	3 cut(s)	40, 48, 52
StyD4I	CCNGG	2 cut(s)	16, 271
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	6 cut(s)	24, 80, 111, 162, 198, 237
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	4 cut(s)	314, 330, 348, 372
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	17, 200, 307
Tth111I	GACNNNGTC	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XhoI	CTCGAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.