Rroxscaffold_2G00124780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006968
Physical Location & Seq
Forward (+)
59228260 .. 59228630
371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124780.1

Sequence Viewer

Length: 276 bp
ATGGATGCGAAGGCGGGTACCGGTGTTCGTCATGTAGCTTGGGGAGAGGTTTGGTCAGGTTGGTTTGTCCGGGATTGCATCGATCCGATGGTGTGGTTTGTGTTCCCATGGGAACTTGGGGTGGCGGTGGTCTCTAAGGTGGCGGTGGTGATCTCTATGAGGGTGGCAGTTTCTATAGAGACAACGAGAGACGGCGGCGGTTTCCAAGAGGATGACGGCGACGGCAAAATTTTTGGGAGGCTAGGGTTTCTCTTAAAGTGGCTTGCTGGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.0

Weight (kDa)

5.17

Isoelectric Point (pI)

19.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 5 cut(s) 14, 125, 143, 195, 198
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 1 cut(s) 19
AgeI ACCGGT 1 cut(s) 20
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 136, 173, 183
AlwI GGATC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 228
AsiGI ACCGGT 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 160
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 273
BccI CCATC 1 cut(s) 82
BceAI ACGGC 3 cut(s) 208, 232, 238
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 136, 173, 183
BfaI CTAG 2 cut(s) 242, 274
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 10, 217
BseYI CCCAGC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 81
BsiSI CCGG 2 cut(s) 21, 70
BsmAI GTCTC 3 cut(s) 136, 173, 183
BsmBI CGTCTC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 82, 150
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 5 cut(s) 14, 125, 143, 195, 198
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 2 cut(s) 82, 150
BssT1I CCWWGG 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 10, 217
BstKTI GATC 2 cut(s) 85, 153
BstMAI GTCTC 3 cut(s) 136, 173, 183
BstMBI GATC 2 cut(s) 82, 150
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 2 cut(s) 10, 217
Cac8I GCNNGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 2 cut(s) 32, 108
CviJI RGCY 4 cut(s) 38, 241, 262, 271
CviKI_1 RGCY 4 cut(s) 38, 241, 262, 271
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 84, 152
DpnII GATC 2 cut(s) 82, 150
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 2 cut(s) 35, 111
FaiI YATR 4 cut(s) 33, 109, 158, 176
FatI CATG 2 cut(s) 31, 107
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 2 cut(s) 17, 224
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 2 cut(s) 242, 274
GluI GCNGC 1 cut(s) 196
GsaI CCCAGC 1 cut(s) 270
HapII CCGG 2 cut(s) 21, 70
Hin1II CATG 2 cut(s) 35, 111
HpaII CCGG 2 cut(s) 21, 70
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 4
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 35, 111
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 82, 150
LpnPI CCDG 4 cut(s) 34, 42, 83, 252
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 242, 274
MalI GATC 2 cut(s) 84, 152
MboI GATC 2 cut(s) 82, 150
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 228
MnlI CCTC 4 cut(s) 40, 153, 202, 231
MseI TTAA 1 cut(s) 254
MspI CCGG 2 cut(s) 21, 70
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 107
NdeII GATC 2 cut(s) 82, 150
NlaIII CATG 2 cut(s) 35, 111
NlaIV GGNNCC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 69
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 82, 150
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 273
SetI ASST 4 cut(s) 40, 51, 61, 141
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 228
SsiI CCGC 5 cut(s) 14, 125, 143, 195, 198
SspMI CTAG 2 cut(s) 242, 274
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 107
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 228
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
XapI RAATTY 1 cut(s) 228
XspI CTAG 2 cut(s) 242, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.