Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009984.1

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

46848 .. 48719

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009984.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcccatgggcaaggccgaccctgctaagaggaaggtcctttcgcctttctctagtctaactcttggtggtgccggcgggacaactcgacaggcctccttgctcctaggctgctgcctaattcttctcgtcgccggctatggttgtggtgacggtggctctgttaccgatctaagattggatcgcttgcggcgatgtttggtcaggttggttttcttgggattgcatcgatctgatggtggtgatgctcgatctatcttgctcgtcaggggacttgagttgctgggcatcaaatctgttatgcaatctgtccttgatggtggttgtgatggtagtgatcagtgttcccatgggaacttgggtggcggtggtctctatgggggtggcagtttctatagagacggcagcggtttccaaaagggtgacggcgacggcagaattgttggggaggctagggtttctcctaaagtggcttgctgggctctagggtttacccaaattgggccttggaggtggttaattttgataaggctatgggtccattttgggtcgtctcctaatgcagaggataatgtggaagatgaggaaactgaaatcaaagccaaggaagacgatgatggcgcatggtgccccaaccaagagcccgatgaagatgaagaagaaaatgaatctccacctgaggggaacaagcttcgagctttctcgattcccttgctcgaagtccccgtcgccgccgccaacgacgacaatgaggagttcttcaatgtgcgcggctccggcttcgactactctgaggtcttcagaggcttcgaaggcctagattttgtcgtcgcgtacgacgacctagtcaagcaaccctatagcggagacggtggttcctccaacaaagcttggactctcagcaaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

32.49

Weight (kDa)

4.64

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	845
AccB1I	GGYRCC	2 cut(s)	71, 627
AccII	CGCG	2 cut(s)	771, 833
AciI	CCGC	8 cut(s)	78, 190, 366, 408, 732, 735, 771, 864
AclWI	GGATC	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	784
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	3 cut(s)	501, 680, 863
AgsI	TTSAA	1 cut(s)	763
AluBI	AGCT	3 cut(s)	691, 698, 890
AluI	AGCT	3 cut(s)	691, 698, 890
Alw26I	GTCTC	4 cut(s)	377, 393, 558, 861
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	4 cut(s)	15, 93, 503, 814
ApeKI	GCWGC	3 cut(s)	111, 114, 405
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
AspA2I	CCTAGG	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	623, 771
AspS9I	GGNCC	3 cut(s)	37, 503, 538
AsuHPI	GGTGA	3 cut(s)	161, 254, 434
AsuII	TTCGAA	1 cut(s)	810
AvaII	GGWCC	2 cut(s)	37, 538
AvrII	CCTAGG	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	632
BanI	GGYRCC	2 cut(s)	71, 627
BanII	GRGCYC	2 cut(s)	484, 645
BbsI	GAAGAC	2 cut(s)	615, 790
BbvI	GCAGC	3 cut(s)	98, 101, 417
BccI	CCATC	4 cut(s)	230, 311, 323, 611
BceAI	ACGGC	3 cut(s)	418, 442, 448
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	4 cut(s)	377, 393, 558, 861
BfaI	CTAG	7 cut(s)	54, 107, 453, 485, 818, 845, 910
BfmI	CTRYAG	2 cut(s)	394, 859
BisI	GCNGC	7 cut(s)	112, 115, 191, 406, 732, 735, 772
BlnI	CCTAGG	1 cut(s)	106
BlsI	GCNGC	7 cut(s)	113, 116, 192, 407, 733, 736, 773
Bme18I	GGWCC	2 cut(s)	37, 538
BmgT120I	GGNCC	3 cut(s)	37, 503, 538
BmiI	GGNNCC	5 cut(s)	73, 539, 629, 775, 877
BmsI	GCATC	3 cut(s)	235, 235, 297
BpiI	GAAGAC	2 cut(s)	615, 790
Bpu14I	TTCGAA	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	6, 106, 349, 506, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 680, 863
Bse118I	RCCGGY	2 cut(s)	74, 134
Bse21I	CCTNAGG	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	229
BseDI	CCNNGG	5 cut(s)	6, 106, 349, 506, 603
BseLI	CCNNNNNNNGG	3 cut(s)	501, 680, 863
BseMII	CTCAG	2 cut(s)	669, 783
BseRI	GAGGAG	1 cut(s)	767
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	98, 101, 417
BseYI	CCCAGC	2 cut(s)	283, 477
Bsh1236I	CGCG	2 cut(s)	771, 833
BshFI	GGCC	4 cut(s)	17, 95, 505, 816
BshNI	GGYRCC	2 cut(s)	71, 627
BshVI	ATCGAT	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	75, 135, 777
BsiWI	CGTACG	1 cut(s)	834
BslFI	GGGAC	3 cut(s)	94, 285, 707
BslI	CCNNNNNNNGG	3 cut(s)	501, 680, 863
BsmAI	GTCTC	4 cut(s)	377, 393, 558, 861
BsmBI	CGTCTC	3 cut(s)	393, 558, 861
BsmFI	GGGAC	3 cut(s)	94, 285, 707
BsnI	GGCC	4 cut(s)	17, 95, 505, 816
Bso31I	GGTCTC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	810
Bsp1286I	GDGCHC	3 cut(s)	484, 632, 645
Bsp143I	GATC	5 cut(s)	169, 181, 230, 251, 337
Bsp19I	CCATGG	2 cut(s)	6, 349
BspACI	CCGC	8 cut(s)	78, 190, 366, 408, 732, 735, 771, 864
BspANI	GGCC	4 cut(s)	17, 95, 505, 816
BspCNI	CTCAG	3 cut(s)	670, 784, 912
BspDI	ATCGAT	1 cut(s)	229
BspFNI	CGCG	2 cut(s)	771, 833
BspLI	GGNNCC	5 cut(s)	73, 539, 629, 775, 877
BspPI	GGATC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	810
BspT107I	GGYRCC	2 cut(s)	71, 627
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	2 cut(s)	74, 134
BssAI	RCCGGY	2 cut(s)	74, 134
BssECI	CCNNGG	5 cut(s)	6, 106, 349, 506, 603
BssMI	GATC	5 cut(s)	169, 181, 230, 251, 337
BssT1I	CCWWGG	5 cut(s)	6, 106, 349, 506, 603
Bst4CI	ACNGT	2 cut(s)	155, 872
BstBI	TTCGAA	1 cut(s)	810
BstC8I	GCNNGC	4 cut(s)	76, 136, 188, 475
BstDEI	CTNAG	5 cut(s)	27, 173, 678, 792, 899
BstDSI	CCRYGG	2 cut(s)	6, 349
BstFNI	CGCG	2 cut(s)	771, 833
BstHHI	GCGC	2 cut(s)	623, 771
BstKTI	GATC	5 cut(s)	172, 184, 233, 254, 340
BstMAI	GTCTC	4 cut(s)	377, 393, 558, 861
BstMBI	GATC	5 cut(s)	169, 181, 230, 251, 337
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 479, 627, 777, 813
BstSFI	CTRYAG	2 cut(s)	394, 859
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	2 cut(s)	771, 833
BstV1I	GCAGC	3 cut(s)	98, 101, 417
BstV2I	GAAGAC	2 cut(s)	615, 790
Bsu15I	ATCGAT	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	17, 95, 505, 816
BsuTUI	ATCGAT	1 cut(s)	229
BtgI	CCRYGG	2 cut(s)	6, 349
BtgZI	GCGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	4 cut(s)	76, 136, 188, 475
CfoI	GCGC	2 cut(s)	623, 771
Cfr10I	RCCGGY	2 cut(s)	74, 134
Cfr13I	GGNCC	3 cut(s)	37, 503, 538
ClaI	ATCGAT	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	835
CviAII	CATG	3 cut(s)	7, 350, 624
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	5 cut(s)	27, 173, 678, 792, 899
DpnI	GATC	5 cut(s)	171, 183, 232, 253, 339
DpnII	GATC	5 cut(s)	169, 181, 230, 251, 337
DrdI	GACNNNNNNGTC	1 cut(s)	845
DseDI	GACNNNNNNGTC	1 cut(s)	845
Eco130I	CCWWGG	5 cut(s)	6, 106, 349, 506, 603
Eco147I	AGGCCT	2 cut(s)	95, 816
Eco24I	GRGCYC	2 cut(s)	484, 645
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	37, 538
Eco57I	CTGAAG	1 cut(s)	784
Eco81I	CCTNAGG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	5 cut(s)	6, 106, 349, 506, 603
EcoT38I	GRGCYC	2 cut(s)	484, 645
ErhI	CCWWGG	5 cut(s)	6, 106, 349, 506, 603
Esp3I	CGTCTC	3 cut(s)	393, 558, 861
FaeI	CATG	3 cut(s)	10, 353, 627
FaiI	YATR	9 cut(s)	8, 141, 302, 351, 378, 396, 535, 625, 861
FaqI	GGGAC	3 cut(s)	94, 285, 707
FatI	CATG	3 cut(s)	6, 349, 623
FauI	CCCGC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	7 cut(s)	112, 115, 191, 406, 732, 735, 772
FriOI	GRGCYC	2 cut(s)	484, 645
Fsp4HI	GCNGC	7 cut(s)	112, 115, 191, 406, 732, 735, 772
FspBI	CTAG	7 cut(s)	54, 107, 453, 485, 818, 845, 910
GlaI	GCGC	2 cut(s)	622, 770
GluI	GCNGC	7 cut(s)	112, 115, 191, 406, 732, 735, 772
GsaI	CCCAGC	2 cut(s)	287, 481
HaeIII	GGCC	4 cut(s)	17, 95, 505, 816
HapII	CCGG	3 cut(s)	75, 135, 777
HhaI	GCGC	2 cut(s)	623, 771
Hin1II	CATG	3 cut(s)	10, 353, 627
Hin6I	GCGC	2 cut(s)	621, 769
HinP1I	GCGC	2 cut(s)	621, 769
HindIII	AAGCTT	2 cut(s)	689, 888
HinfI	GANTC	3 cut(s)	668, 706, 895
HpaII	CCGG	3 cut(s)	75, 135, 777
HphI	GGTGA	3 cut(s)	161, 254, 434
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	3 cut(s)	235, 793, 803
Hpy188III	TCNNGA	1 cut(s)	703
Hpy8I	GTNNAC	1 cut(s)	492
Hpy99I	CGWCG	6 cut(s)	134, 434, 731, 746, 833, 842
HpyAV	CCTTC	2 cut(s)	28, 806
HpyCH4III	ACNGT	2 cut(s)	155, 872
HpyCH4V	TGCA	3 cut(s)	226, 304, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 479, 627, 777, 813
HpyF3I	CTNAG	5 cut(s)	27, 173, 678, 792, 899
Hsp92II	CATG	3 cut(s)	10, 353, 627
HspAI	GCGC	2 cut(s)	621, 769
KroI	GCCGGC	2 cut(s)	74, 134
KroNI	GCCGGC	2 cut(s)	76, 136
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	169, 181, 230, 251, 337
LmnI	GCTCC	2 cut(s)	108, 779
Lsp1109I	GCAGC	3 cut(s)	98, 101, 417
LweI	GCATC	3 cut(s)	235, 235, 297
MaeI	CTAG	7 cut(s)	54, 107, 453, 485, 818, 845, 910
MaeIII	GTNAC	3 cut(s)	149, 163, 422
MalI	GATC	5 cut(s)	171, 183, 232, 253, 339
MboI	GATC	5 cut(s)	169, 181, 230, 251, 337
MboII	GAAGA	8 cut(s)	116, 590, 620, 662, 668, 671, 751, 790
MhlI	GDGCHC	3 cut(s)	484, 632, 645
MluCI	AATT	4 cut(s)	120, 438, 498, 519
MlyI	GAGTC	1 cut(s)	889
MmeI	TCCRAC	1 cut(s)	906
MroNI	GCCGGC	2 cut(s)	74, 134
MseI	TTAA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	3 cut(s)	75, 135, 777
MvnI	CGCG	2 cut(s)	771, 833
MwoI	GCNNNNNNNGC	5 cut(s)	23, 479, 627, 777, 813
NaeI	GCCGGC	2 cut(s)	76, 136
NcoI	CCATGG	2 cut(s)	6, 349
NdeII	GATC	5 cut(s)	169, 181, 230, 251, 337
NgoMIV	GCCGGC	2 cut(s)	74, 134
NlaIII	CATG	3 cut(s)	10, 353, 627
NlaIV	GGNNCC	5 cut(s)	73, 539, 629, 775, 877
NmuCI	GTSAC	2 cut(s)	149, 422
NspV	TTCGAA	1 cut(s)	810
PceI	AGGCCT	2 cut(s)	95, 816
PcsI	WCGNNNNNNNCGW	4 cut(s)	190, 723, 834, 837
PdiI	GCCGGC	2 cut(s)	76, 136
PfeI	GAWTC	2 cut(s)	668, 706
Pfl23II	CGTACG	1 cut(s)	834
PflFI	GACNNNGTC	1 cut(s)	845
PkrI	GCNGC	7 cut(s)	113, 116, 192, 407, 733, 736, 773
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
PspFI	CCCAGC	2 cut(s)	283, 477
PspLI	CGTACG	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	73, 539, 629, 775, 877
PspPI	GGNCC	3 cut(s)	37, 503, 538
PspPPI	RGGWCCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	845
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	7 cut(s)	112, 115, 191, 406, 732, 735, 772
Sau3AI	GATC	5 cut(s)	169, 181, 230, 251, 337
Sau96I	GGNCC	3 cut(s)	37, 503, 538
SchI	GAGTC	1 cut(s)	889
SduI	GDGCHC	3 cut(s)	484, 632, 645
SetI	ASST	9 cut(s)	39, 209, 515, 679, 693, 700, 798, 846, 892
SfaNI	GCATC	3 cut(s)	235, 235, 297
SfcI	CTRYAG	2 cut(s)	394, 859
SfuI	TTCGAA	1 cut(s)	810
SinI	GGWCC	2 cut(s)	37, 538
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	120, 438, 498, 519
SseBI	AGGCCT	2 cut(s)	95, 816
SsiI	CCGC	8 cut(s)	78, 190, 366, 408, 732, 735, 771, 864
SspMI	CTAG	7 cut(s)	54, 107, 453, 485, 818, 845, 910
StuI	AGGCCT	2 cut(s)	95, 816
StyI	CCWWGG	5 cut(s)	6, 106, 349, 506, 603
TaaI	ACNGT	2 cut(s)	155, 872
TaqI	TCGA	8 cut(s)	88, 229, 250, 694, 704, 717, 783, 810
TasI	AATT	4 cut(s)	120, 438, 498, 519
TauI	GCSGC	4 cut(s)	193, 734, 737, 774
TfiI	GAWTC	2 cut(s)	668, 706
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	2 cut(s)	149, 422
TseI	GCWGC	3 cut(s)	111, 114, 405
Tsp45I	GTSAC	2 cut(s)	149, 422
TspDTI	ATGAA	3 cut(s)	663, 669, 681
TspRI	CASTG	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	845
VpaK11BI	GGWCC	2 cut(s)	37, 538
XmaJI	CCTAGG	1 cut(s)	106
XspI	CTAG	7 cut(s)	54, 107, 453, 485, 818, 845, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.