RLG00000033397

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006968
Physical Location & Seq
Forward (+)
26592711 .. 26593973
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033397

Sequence Viewer

Length: 333 bp
ATGGTGGATCTATCTTGCTCATTGGGGGACTTGAGTTGCTGGGCATCAAATTTGATTATGCATTCTGTCCTTGATGGTGGTTATGATGGTAGTGGTCAGTGTTCCGATGGGAACTTGGGTGGCGATGGTCTCTACGGTGGCAGTGGTGGTCTCTATGGGGGTGGCAGTTTCTATAGAGAAGGCGGAGACAACGGCGGTTTCCAAGAGGGTGACGGTGATGGCAGGATTGTTGGGGAAGCTAGGGTTTCTCCTAAAGTGGCTTGCTGGGCTCTAGGGTTTGCCCTAGGGTTTACCCAAGTTGGGCCTTGGAGTCCTGCATGGTCTAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.1

Weight (kDa)

4.05

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 183, 195
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 300
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 3 cut(s) 134, 155, 180
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 49
AspA2I CCTAGG 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 221, 227
AvrII CCTAGG 1 cut(s) 283
BanII GRGCYC 1 cut(s) 271
BccI CCATC 5 cut(s) 68, 80, 101, 119, 212
BceAI ACGGC 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 134, 155, 180
BfaI CTAG 4 cut(s) 240, 272, 284, 324
BfmI CTRYAG 1 cut(s) 172
BlnI CCTAGG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 302
BmsI GCATC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 134, 155
BsaJI CCNNGG 2 cut(s) 283, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 283, 305
BseLI CCNNNNNNNGG 1 cut(s) 300
BseYI CCCAGC 2 cut(s) 39, 264
BshFI GGCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 3 cut(s) 134, 155, 180
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 1 cut(s) 304
Bso31I GGTCTC 2 cut(s) 134, 155
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 183, 195
BspANI GGCC 1 cut(s) 304
BspPI GGATC 1 cut(s) 15
BspTNI GGTCTC 2 cut(s) 134, 155
BssECI CCNNGG 2 cut(s) 283, 305
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 2 cut(s) 283, 305
Bst4CI ACNGT 2 cut(s) 137, 215
BstC8I GCNNGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 3 cut(s) 134, 155, 180
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 104, 148
Cac8I GCNNGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 302
CviAII CATG 2 cut(s) 318, 330
CviJI RGCY 4 cut(s) 239, 260, 269, 304
CviKI_1 RGCY 4 cut(s) 239, 260, 269, 304
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 283, 305
Eco24I GRGCYC 1 cut(s) 271
Eco31I GGTCTC 2 cut(s) 134, 155
EcoT14I CCWWGG 2 cut(s) 283, 305
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 2 cut(s) 283, 305
FaeI CATG 2 cut(s) 321, 333
FaiI YATR 6 cut(s) 59, 84, 156, 174, 319, 331
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 317, 329
FriOI GRGCYC 1 cut(s) 271
FspBI CTAG 4 cut(s) 240, 272, 284, 324
GsaI CCCAGC 2 cut(s) 43, 268
HaeIII GGCC 1 cut(s) 304
Hin1II CATG 2 cut(s) 321, 333
HinfI GANTC 1 cut(s) 310
HphI GGTGA 2 cut(s) 221, 227
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 137, 215
HpyCH4V TGCA 2 cut(s) 61, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 321, 333
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 25, 208, 250, 327
LweI GCATC 1 cut(s) 53
MaeI CTAG 4 cut(s) 240, 272, 284, 324
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 1 cut(s) 199
Mph1103I ATGCAT 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 321, 333
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 63
PctI GAATGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PspFI CCCAGC 2 cut(s) 39, 264
PspPI GGNCC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 7
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 271
SetI ASST 1 cut(s) 241
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 1 cut(s) 49
SsiI CCGC 2 cut(s) 183, 195
SspMI CTAG 4 cut(s) 240, 272, 284, 324
StyI CCWWGG 2 cut(s) 283, 305
TaaI ACNGT 2 cut(s) 137, 215
TasI AATT 1 cut(s) 49
TscAI CASTG 2 cut(s) 104, 148
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspRI CASTG 2 cut(s) 104, 148
XapI RAATTY 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 283
XspI CTAG 4 cut(s) 240, 272, 284, 324
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.