Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Reverse (-)

69374727 .. 69386131

Gene Structure 11405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAATCTTGCTCTCTGATCGATGATATGGGTAGGGGATATGCTCGATGTGGCTTGATTACCAGTGACTTAGAGGATGGTTGGCTATTTGGCGATGCAGCAAGCAGATGGGATCCTCCGGCGGGTGATAGCGGCATTGAGCACGAGTTCATTAAACTTAGGGCAATTAGCCTTGCTTTTGGTGCGGATGTTAGTGGGAGGGAAAAGTCTCCGAAGCGATCCGGGACCCGCCGCCGATGCCCGAATATCTATGATCGCGGTGGTAAAATCCGCAGCCTGAAAAAGAACCTACTAGAATCTATTAGCACGCCGCCTGTTCCACTAGACGATCCACGTGGCACAATCCCATTCGTCCCACCGCCGGTTCCCATACAGACGCACGTAGACGATCATCAACATCCCAACTCATTCGCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.28

Weight (kDa)

7.76

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	2 cut(s)	258, 413
AciI	CCGC	9 cut(s)	122, 132, 185, 229, 232, 258, 271, 311, 359
AclWI	GGATC	4 cut(s)	107, 120, 213, 323
AcvI	CACGTG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	122, 361
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	4 cut(s)	107, 120, 213, 323
ApeKI	GCWGC	2 cut(s)	98, 273
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	143
BbrPI	CACGTG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	110, 285
BccI	CCATC	2 cut(s)	71, 102
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	293, 323
BisI	GCNGC	5 cut(s)	99, 133, 232, 274, 311
BlsI	GCNGC	5 cut(s)	100, 134, 233, 275, 312
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	4 cut(s)	114, 226, 227, 366
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	85, 227
BpuMI	CCSGG	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	2 cut(s)	335, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 361
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	63
BseCI	ATCGAT	1 cut(s)	21
BseGI	GGATG	3 cut(s)	82, 193, 397
BseLI	CCNNNNNNNGG	2 cut(s)	122, 361
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	110, 285
Bsh1236I	CGCG	2 cut(s)	258, 413
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	119, 222, 362
BslFI	GGGAC	2 cut(s)	238, 338
BslI	CCNNNNNNNGG	2 cut(s)	122, 361
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	238, 338
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
BspACI	CCGC	9 cut(s)	122, 132, 185, 229, 232, 258, 271, 311, 359
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	258, 413
BspLI	GGNNCC	4 cut(s)	114, 226, 227, 366
BspPI	GGATC	4 cut(s)	107, 120, 213, 323
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	361
BssMI	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
BssSI	CACGAG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	143
BstBAI	YACGTR	2 cut(s)	335, 382
BstC8I	GCNNGC	2 cut(s)	103, 308
BstDEI	CTNAG	2 cut(s)	70, 158
BstF5I	GGATG	3 cut(s)	82, 193, 397
BstFNI	CGCG	2 cut(s)	258, 413
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	6 cut(s)	21, 115, 221, 256, 331, 391
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 237
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	2 cut(s)	258, 413
BstV1I	GCAGC	2 cut(s)	110, 285
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	82, 193, 397
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	103, 308
CfoI	GCGC	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	385
CviJI	RGCY	4 cut(s)	54, 85, 171, 276
CviKI_1	RGCY	4 cut(s)	54, 85, 171, 276
DdeI	CTNAG	2 cut(s)	70, 158
DpnI	GATC	6 cut(s)	20, 114, 220, 255, 330, 390
DpnII	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
Eco47I	GGWCC	1 cut(s)	225
Eco72I	CACGTG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	225
FaiI	YATR	4 cut(s)	29, 42, 252, 371
FaqI	GGGAC	2 cut(s)	238, 338
FauI	CCCGC	2 cut(s)	115, 236
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	99, 133, 232, 274, 311
FokI	GGATG	3 cut(s)	89, 200, 384
Fsp4HI	GCNGC	5 cut(s)	99, 133, 232, 274, 311
FspBI	CTAG	2 cut(s)	293, 323
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	5 cut(s)	99, 133, 232, 274, 311
HapII	CCGG	3 cut(s)	119, 222, 362
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	3 cut(s)	119, 222, 362
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	18, 213
Hpy8I	GTNNAC	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	334, 381
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 237
HpyF3I	CTNAG	2 cut(s)	70, 158
HpySE526I	ACGT	2 cut(s)	334, 381
HspAI	GCGC	1 cut(s)	413
KflI	GGGWCCC	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
LpnPI	CCDG	6 cut(s)	76, 132, 235, 290, 327, 375
Lsp1109I	GCAGC	2 cut(s)	110, 285
LweI	GCATC	2 cut(s)	85, 227
MaeI	CTAG	2 cut(s)	293, 323
MaeII	ACGT	2 cut(s)	334, 381
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	6 cut(s)	20, 114, 220, 255, 330, 390
MboI	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	165
MnlI	CCTC	3 cut(s)	67, 126, 192
MseI	TTAA	1 cut(s)	153
MspI	CCGG	3 cut(s)	119, 222, 362
MspR9I	CCNGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	258, 413
MwoI	GCNNNNNNNGC	2 cut(s)	182, 237
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
NlaIV	GGNNCC	4 cut(s)	114, 226, 227, 366
NmuCI	GTSAC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	100, 134, 233, 275, 312
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
Ppu21I	YACGTR	2 cut(s)	335, 382
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
PspCI	CACGTG	1 cut(s)	335
PspN4I	GGNNCC	4 cut(s)	114, 226, 227, 366
PspPI	GGNCC	1 cut(s)	225
PspPPI	RGGWCCY	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	5 cut(s)	99, 133, 232, 274, 311
Sau3AI	GATC	6 cut(s)	18, 112, 218, 253, 328, 388
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	291, 337, 384
SfaNI	GCATC	2 cut(s)	85, 227
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	9 cut(s)	122, 132, 185, 229, 232, 258, 271, 311, 359
SspMI	CTAG	2 cut(s)	293, 323
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	2 cut(s)	337, 384
TaqI	TCGA	2 cut(s)	21, 46
TasI	AATT	1 cut(s)	165
TauI	GCSGC	3 cut(s)	135, 234, 313
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	98, 273
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	17, 139
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	293, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.