Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

11880870 .. 11884933

Gene Structure 4064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAATCATATGAGAAATCCTACAAACTACAGTCTTGCCTCTGGGTCAGAGATTTGGAATTGCAAGCAGCCCCATTGCCTCCTCAATATCAATCCATGACTCTAGCAGCCGCAGCCACAGCCGCAGCTCAGATGAATCAAAGCAGGACTACTCGATGGGGCTTCTTGGTCCTAGGCTACTGCCTAACTCTTCATGTCGTCGGAGCTAGCTATGGTGATGGTAGGTCTAGGGTCGATCTGATCTTGGATCGGTATGCTAGTGATGTGGATTTTATGGGGAGGATGGATGCGAGGTTAGGTATCGGTGTACGTCCTGTGGATTATGGTGGTGTTCGCTTCTATGGTGATCGTCGCGTTGATTTTTCAGGTTGGCTATCTTGGGATCGCATGGTTCCAAGGATGGTGATGGTGGATCGGTCTTGCTTGTTGGCAGACCTGAGTTGCTGGGGATCGGATTTGATTATGCGGTCTGTCCATGACGGTGGGTATGAAGTCGGTGGTCAAGGCTTCTGTCTGTGCAGCGGTGTTTGCTATGGTGGCAGTGGTGGTCTCATTAGGGGCGGTCGTTTCTATGGTGACGGTGGCGGCGGCCGAATCATACTGGAAGCTAGGGTTTCTCCTAAATGGGCTTGCTGTTGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.53

Weight (kDa)

8.58

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	7 cut(s)	111, 123, 466, 522, 561, 585, 588
AclWI	GGATC	4 cut(s)	255, 390, 420, 457
AcoI	YGGCCR	1 cut(s)	589
AfaI	GTAC	1 cut(s)	309
AluBI	AGCT	4 cut(s)	128, 206, 210, 608
AluI	AGCT	4 cut(s)	128, 206, 210, 608
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	4 cut(s)	255, 390, 420, 457
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	5 cut(s)	68, 107, 113, 125, 519
AspA2I	CCTAGG	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	4 cut(s)	227, 356, 415, 587
AsuNHI	GCTAGC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	169
AvrII	CCTAGG	1 cut(s)	172
BbvI	GCAGC	5 cut(s)	80, 119, 125, 137, 531
BccI	CCATC	5 cut(s)	150, 212, 277, 394, 400
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	6 cut(s)	104, 173, 207, 228, 258, 609
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	9 cut(s)	69, 108, 111, 114, 123, 126, 520, 586, 589
BlnI	CCTAGG	1 cut(s)	172
BlsI	GCNGC	9 cut(s)	70, 109, 112, 115, 124, 127, 521, 587, 590
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	172, 395
Bse1I	ACTGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	172, 395
BseGI	GGATG	3 cut(s)	288, 292, 405
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	143, 428
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	72
BseX3I	CGGCCG	1 cut(s)	589
BseXI	GCAGC	5 cut(s)	80, 119, 125, 137, 531
BseYI	CCCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	2 cut(s)	565, 592
BshFI	GGCC	1 cut(s)	591
BsiEI	CGRYCG	2 cut(s)	565, 592
BsmAI	GTCTC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	591
Bso31I	GGTCTC	1 cut(s)	554
Bsp143I	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
BspACI	CCGC	7 cut(s)	111, 123, 466, 522, 561, 585, 588
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	2 cut(s)	142, 429
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	210
BspPI	GGATC	4 cut(s)	255, 390, 420, 457
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	2 cut(s)	172, 395
BssMI	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
BssT1I	CCWWGG	2 cut(s)	172, 395
Bst4CI	ACNGT	3 cut(s)	33, 482, 581
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	66, 208, 631
BstDEI	CTNAG	2 cut(s)	129, 437
BstF5I	GGATG	3 cut(s)	288, 292, 405
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	7 cut(s)	238, 243, 250, 349, 385, 415, 452
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
BstMCI	CGRYCG	2 cut(s)	565, 592
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 119, 122, 528, 537
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	5 cut(s)	80, 119, 125, 137, 531
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstZI	CGGCCG	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	288, 292, 405
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	66, 208, 631
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	97, 194, 388, 476
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	129, 437
DpnI	GATC	7 cut(s)	237, 242, 249, 348, 384, 414, 451
DpnII	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
EaeI	YGGCCR	1 cut(s)	589
EagI	CGGCCG	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	172, 395
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	589
EcoT14I	CCWWGG	2 cut(s)	172, 395
ErhI	CCWWGG	2 cut(s)	172, 395
FaeI	CATG	4 cut(s)	100, 197, 391, 479
FatI	CATG	4 cut(s)	96, 193, 387, 475
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	9 cut(s)	69, 108, 111, 114, 123, 126, 520, 586, 589
FokI	GGATG	3 cut(s)	295, 299, 412
Fsp4HI	GCNGC	9 cut(s)	69, 108, 111, 114, 123, 126, 520, 586, 589
FspBI	CTAG	6 cut(s)	104, 173, 207, 228, 258, 609
GluI	GCNGC	9 cut(s)	69, 108, 111, 114, 123, 126, 520, 586, 589
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	591
Hin1II	CATG	4 cut(s)	100, 197, 391, 479
HinfI	GANTC	3 cut(s)	100, 136, 594
HphI	GGTGA	4 cut(s)	227, 356, 415, 587
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	5 cut(s)	50, 132, 203, 240, 454
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	2 cut(s)	203, 354
HpyCH4III	ACNGT	3 cut(s)	33, 482, 581
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	64, 519
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 119, 122, 528, 537
HpyF3I	CTNAG	2 cut(s)	129, 437
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	100, 197, 391, 479
Kzo9I	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	7 cut(s)	28, 130, 327, 351, 430, 449, 587
Lsp1109I	GCAGC	5 cut(s)	80, 119, 125, 137, 531
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	6 cut(s)	104, 173, 207, 228, 258, 609
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	7 cut(s)	237, 242, 249, 348, 384, 414, 451
MboI	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
MboII	GAAGA	1 cut(s)	182
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	50, 90, 93, 273, 285
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	113, 119, 122, 528, 537
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	100, 197, 391, 479
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	136, 594
PkrI	GCNGC	9 cut(s)	70, 109, 112, 115, 124, 127, 521, 587, 590
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	480
SatI	GCNGC	9 cut(s)	69, 108, 111, 114, 123, 126, 520, 586, 589
Sau3AI	GATC	7 cut(s)	235, 240, 247, 346, 382, 412, 449
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	7 cut(s)	111, 123, 466, 522, 561, 585, 588
SspMI	CTAG	6 cut(s)	104, 173, 207, 228, 258, 609
StyI	CCWWGG	2 cut(s)	172, 395
TaaI	ACNGT	3 cut(s)	33, 482, 581
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	154, 234
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	1 cut(s)	59
TauI	GCSGC	4 cut(s)	113, 125, 588, 591
TfiI	GAWTC	2 cut(s)	136, 594
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	5 cut(s)	68, 107, 113, 125, 519
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	4 cut(s)	17, 149, 182, 504
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	169
XmaJI	CCTAGG	1 cut(s)	172
XspI	CTAG	6 cut(s)	104, 173, 207, 228, 258, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.