Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

29973491 .. 29976305

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG293400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCAGTCTGCCCATGATCGTGATTATGCAGACGGTGGTCAAGGTTCCTGTCTGTGCGGCGGTGTTCATTATGGTGGCAATGGTGGTGTAGTTGGGGGCGTTAGTTTCTATGGTGACGGCGGCGTCTTCCACGAGAAGGGTGACGGCGGAATCATACGGGAGGCTAGGGTTTCTCCTCAATGGGCTTGTTGGGCTCTAGGGTTATGGTCAATTTTGGCTGGGCTCTGGGTCCTTGGGCGTATGTTTTCGTTGTTTAAATTAGTGGGCCATTCTCTTTTTATTCAAAGAGAGGATGAATCTATTTTTTTCCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.24

Weight (kDa)

5.67

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AciI	CCGC	4 cut(s)	57, 60, 120, 147
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	229, 265
AsuHPI	GGTGA	2 cut(s)	125, 152
AvaII	GGWCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	196, 225
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	118
BceAI	ACGGC	2 cut(s)	133, 160
BciT130I	CCWGG	1 cut(s)	311
BfaI	CTAG	2 cut(s)	165, 197
BisI	GCNGC	2 cut(s)	58, 121
BlsI	GCNGC	2 cut(s)	59, 122
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	229, 265
BmiI	GGNNCC	2 cut(s)	46, 230
BmrFI	CCNGG	1 cut(s)	311
BoxI	GACNNNNGTC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	232, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	232, 310
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	218
BshFI	GGCC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	196, 225
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	4 cut(s)	57, 60, 120, 147
BspANI	GGCC	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	46, 230
BsrDI	GCAATG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	232, 310
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	229, 265
CseI	GACGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	6 cut(s)	164, 185, 194, 218, 223, 267
CviKI_1	RGCY	6 cut(s)	164, 185, 194, 218, 223, 267
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraI	TTTAAA	1 cut(s)	256
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	2 cut(s)	196, 225
Eco47I	GGWCC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	196, 225
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	1 cut(s)	17
FaiI	YATR	7 cut(s)	15, 27, 72, 111, 155, 205, 242
FatI	CATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	58, 121
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	2 cut(s)	196, 225
Fsp4HI	GCNGC	2 cut(s)	58, 121
FspBI	CTAG	2 cut(s)	165, 197
GluI	GCNGC	2 cut(s)	58, 121
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	2 cut(s)	150, 296
HphI	GGTGA	2 cut(s)	125, 152
Hpy188III	TCNNGA	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	4, 29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	61, 204, 211, 296
MaeI	CTAG	2 cut(s)	165, 197
MaeIII	GTNAC	2 cut(s)	113, 140
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	196, 225
MluCI	AATT	2 cut(s)	210, 257
MnlI	CCTC	3 cut(s)	154, 186, 283
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	18, 72
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	2 cut(s)	46, 230
NmuCI	GTSAC	2 cut(s)	113, 140
PfeI	GAWTC	2 cut(s)	150, 296
PkrI	GCNGC	2 cut(s)	59, 122
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	46, 230
PspPI	GGNCC	2 cut(s)	229, 265
PspPPI	RGGWCCY	1 cut(s)	229
RseI	CAYNNNNRTG	2 cut(s)	18, 72
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	58, 121
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	2 cut(s)	229, 265
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	196, 225
SetI	ASST	1 cut(s)	46
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	18, 72
Sse9I	AATT	2 cut(s)	210, 257
SsiI	CCGC	4 cut(s)	57, 60, 120, 147
SspMI	CTAG	2 cut(s)	165, 197
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	35
TasI	AATT	2 cut(s)	210, 257
TauI	GCSGC	2 cut(s)	60, 123
TfiI	GAWTC	2 cut(s)	150, 296
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	2 cut(s)	113, 140
Tsp45I	GTSAC	2 cut(s)	113, 140
TspDTI	ATGAA	2 cut(s)	56, 309
VpaK11BI	GGWCC	1 cut(s)	229
XspI	CTAG	2 cut(s)	165, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.