Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020711.1

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

10198 .. 13836

Gene Structure 3639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020711.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggctgagaaagagtgtactgtcaattttgagctactcaacttcggccaagacacggtgccacggcgaaagctccactccgactacctcgccgtccggagcttcaccagtgtggagaatctatttgctctgtcatttctggcaaaagacggcagagttagaattgctgtcgaagcaaatggttctcatattgtttctcctacgaatggtcctgttgccaatgaagtggcttatcaccattttgtgttccgatttgatttcaaggactggaaggtgaaaaatcaactgcagaagaattctttgaaaatgattatgctgttggagccacagaacttcgcaggttctaactcttggtggtgccggcgggacaactcgaggggctccttgctcctaggctgctgcttaattcttcttgtcaccggctatggttgtggtgatggtggctctgttctcgatctaagattggatcggtatgttaattatgtgggttctctagggaggatggatgcgaaggcgagtaccagtgttcggcatgcagcttgcatcgatgatcgcatcgatctgatggatggtagtggtcagtgttcccatgggaacttgggtggtggtggtctctgcggtggcagtggtggtctctatgagggtggtagtttctatagagacggcggcggtttccaagaaggtgacggcgatggcagaattgttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

236

Amino Acids

25.7

Weight (kDa)

6.3

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	58, 357
AccIII	TCCGGA	1 cut(s)	96
AciI	CCGC	4 cut(s)	364, 618, 666, 669
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	2 cut(s)	19, 520
AfiI	CCNNNNNNNGG	3 cut(s)	55, 206, 528
AgsI	TTSAA	2 cut(s)	262, 304
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	34, 73, 102, 539
AluI	AGCT	4 cut(s)	34, 73, 102, 539
Alw26I	GTCTC	3 cut(s)	617, 638, 654
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	396, 399, 536
ApoI	RAATTY	1 cut(s)	295
AspA2I	CCTAGG	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	6 cut(s)	97, 227, 286, 409, 446, 695
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	209
AvrII	CCTAGG	1 cut(s)	391
BanI	GGYRCC	2 cut(s)	58, 357
BanII	GRGCYC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	383, 386, 548
BccI	CCATC	5 cut(s)	431, 496, 559, 563, 686
BceAI	ACGGC	5 cut(s)	77, 80, 166, 679, 703
BcoDI	GTCTC	3 cut(s)	617, 638, 654
BfaI	CTAG	2 cut(s)	392, 494
BfmI	CTRYAG	2 cut(s)	287, 655
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	4 cut(s)	397, 400, 537, 667
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	4 cut(s)	398, 401, 538, 668
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	4 cut(s)	60, 324, 359, 382
BmsI	GCATC	3 cut(s)	496, 552, 564
Bsa29I	ATCGAT	2 cut(s)	546, 558
BsaI	GGTCTC	2 cut(s)	617, 638
BsaJI	CCNNGG	3 cut(s)	62, 391, 589
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 206, 528
Bse118I	RCCGGY	2 cut(s)	360, 419
Bse1I	ACTGG	3 cut(s)	108, 272, 522
BseAI	TCCGGA	1 cut(s)	96
BseCI	ATCGAT	2 cut(s)	546, 558
BseDI	CCNNGG	3 cut(s)	62, 391, 589
BseGI	GGATG	3 cut(s)	507, 511, 574
BseLI	CCNNNNNNNGG	3 cut(s)	55, 206, 528
BseNI	ACTGG	3 cut(s)	108, 272, 522
BseXI	GCAGC	3 cut(s)	383, 386, 548
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	2 cut(s)	58, 357
BshVI	ATCGAT	2 cut(s)	546, 558
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	3 cut(s)	97, 361, 420
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	55, 206, 528
BsmAI	GTCTC	3 cut(s)	617, 638, 654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	2 cut(s)	617, 638
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	454, 466, 550, 559
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	4 cut(s)	364, 618, 666, 669
BspANI	GGCC	1 cut(s)	48
BspDI	ATCGAT	2 cut(s)	546, 558
BspEI	TCCGGA	1 cut(s)	96
BspLI	GGNNCC	4 cut(s)	60, 324, 359, 382
BspMAI	CTGCAG	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	474
BspT107I	GGYRCC	2 cut(s)	58, 357
BspTNI	GGTCTC	2 cut(s)	617, 638
BsrFI	RCCGGY	2 cut(s)	360, 419
BsrI	ACTGG	3 cut(s)	108, 272, 522
BssAI	RCCGGY	2 cut(s)	360, 419
BssECI	CCNNGG	3 cut(s)	62, 391, 589
BssMI	GATC	4 cut(s)	454, 466, 550, 559
BssT1I	CCWWGG	2 cut(s)	391, 589
Bst4CI	ACNGT	2 cut(s)	22, 58
BstC8I	GCNNGC	3 cut(s)	362, 534, 541
BstDEI	CTNAG	2 cut(s)	6, 458
BstDSI	CCRYGG	2 cut(s)	62, 589
BstF5I	GGATG	3 cut(s)	507, 511, 574
BstKTI	GATC	4 cut(s)	457, 469, 553, 562
BstMAI	GTCTC	3 cut(s)	617, 638, 654
BstMBI	GATC	4 cut(s)	454, 466, 550, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 322
BstNSI	RCATGY	1 cut(s)	536
BstSFI	CTRYAG	2 cut(s)	287, 655
BstV1I	GCAGC	3 cut(s)	383, 386, 548
BstXI	CCANNNNNNTGG	1 cut(s)	226
Bsu15I	ATCGAT	2 cut(s)	546, 558
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	2 cut(s)	546, 558
BtgI	CCRYGG	2 cut(s)	62, 589
BtgZI	GCGATG	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	507, 511, 574
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	4 cut(s)	115, 529, 587, 631
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	3 cut(s)	362, 534, 541
Cfr10I	RCCGGY	2 cut(s)	360, 419
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	2 cut(s)	546, 558
Csp6I	GTAC	2 cut(s)	18, 519
CviAII	CATG	2 cut(s)	533, 590
CviQI	GTAC	2 cut(s)	18, 519
DdeI	CTNAG	2 cut(s)	6, 458
DpnI	GATC	4 cut(s)	456, 468, 552, 561
DpnII	GATC	4 cut(s)	454, 466, 550, 559
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	391, 589
Eco24I	GRGCYC	1 cut(s)	383
Eco31I	GGTCTC	2 cut(s)	617, 638
Eco47I	GGWCC	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	391, 589
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	2 cut(s)	391, 589
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	2 cut(s)	536, 593
FaiI	YATR	9 cut(s)	189, 314, 426, 474, 483, 534, 591, 639, 657
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	532, 589
FauI	CCCGC	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	397, 400, 537, 667
FokI	GGATG	3 cut(s)	514, 518, 581
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	397, 400, 537, 667
FspBI	CTAG	2 cut(s)	392, 494
GluI	GCNGC	4 cut(s)	397, 400, 537, 667
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	3 cut(s)	97, 361, 420
Hin1II	CATG	2 cut(s)	536, 593
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	3 cut(s)	97, 361, 420
HphI	GGTGA	6 cut(s)	97, 227, 286, 409, 446, 695
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	82, 251, 564
Hpy188III	TCNNGA	2 cut(s)	97, 452
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	265, 505, 674
HpyCH4III	ACNGT	2 cut(s)	22, 58
HpyCH4V	TGCA	3 cut(s)	289, 536, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 322
HpyF3I	CTNAG	2 cut(s)	6, 458
Hsp92II	CATG	2 cut(s)	536, 593
Kpn2I	TCCGGA	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	360
KroNI	GCCGGC	1 cut(s)	362
Kzo9I	GATC	4 cut(s)	454, 466, 550, 559
LmnI	GCTCC	5 cut(s)	78, 99, 322, 386, 393
LpnPI	CCDG	9 cut(s)	110, 121, 125, 225, 253, 324, 374, 433, 535
Lsp1109I	GCAGC	3 cut(s)	383, 386, 548
LweI	GCATC	3 cut(s)	496, 552, 564
MaeI	CTAG	2 cut(s)	392, 494
MaeIII	GTNAC	2 cut(s)	415, 683
MalI	GATC	4 cut(s)	456, 468, 552, 561
MboI	GATC	4 cut(s)	454, 466, 550, 559
MboII	GAAGA	2 cut(s)	304, 401
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	6 cut(s)	25, 162, 295, 405, 478, 699
MmeI	TCCRAC	2 cut(s)	105, 300
MnlI	CCTC	4 cut(s)	98, 369, 492, 634
MroI	TCCGGA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	360
MseI	TTAA	2 cut(s)	404, 477
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	3 cut(s)	97, 361, 420
MwoI	GCNNNNNNNGC	2 cut(s)	173, 322
NaeI	GCCGGC	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	4 cut(s)	454, 466, 550, 559
NgoMIV	GCCGGC	1 cut(s)	360
NlaIII	CATG	2 cut(s)	536, 593
NlaIV	GGNNCC	4 cut(s)	60, 324, 359, 382
NmuCI	GTSAC	2 cut(s)	415, 683
NspI	RCATGY	1 cut(s)	536
OliI	CACNNNNGTG	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	398, 401, 538, 668
PspN4I	GGNNCC	4 cut(s)	60, 324, 359, 382
PspPI	GGNCC	1 cut(s)	209
PspXI	VCTCGAGB	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	19, 520
RsaNI	GTAC	2 cut(s)	18, 519
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	404, 477
SatI	GCNGC	4 cut(s)	397, 400, 537, 667
Sau3AI	GATC	4 cut(s)	454, 466, 550, 559
Sau96I	GGNCC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	8 cut(s)	36, 75, 90, 104, 276, 343, 541, 685
SfaNI	GCATC	3 cut(s)	496, 552, 564
SfcI	CTRYAG	2 cut(s)	287, 655
Sfr274I	CTCGAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	6 cut(s)	25, 162, 295, 405, 478, 699
SsiI	CCGC	4 cut(s)	364, 618, 666, 669
SspMI	CTAG	2 cut(s)	392, 494
StyI	CCWWGG	2 cut(s)	391, 589
TaaI	ACNGT	2 cut(s)	22, 58
TaqI	TCGA	5 cut(s)	171, 374, 453, 546, 558
TasI	AATT	6 cut(s)	25, 162, 295, 405, 478, 699
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	404, 477
Tru9I	TTAA	2 cut(s)	404, 477
TscAI	CASTG	4 cut(s)	115, 529, 587, 631
TseFI	GTSAC	2 cut(s)	415, 683
TseI	GCWGC	3 cut(s)	396, 399, 536
Tsp45I	GTSAC	2 cut(s)	415, 683
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	4 cut(s)	115, 529, 587, 631
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	391
XspI	CTAG	2 cut(s)	392, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.