Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

3232718 .. 3233071

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGATGGGAAGGTCGGTACCGGTGTTCGGCATGCGGCTTGCGGCGATGATTGGTCGTGTGGGTTTGCTTGGGATTGCATTGATCCGATGGTGGTGATGGTGGATCCGTCTTGCTCGTCGGGGAAATTGAGTTGTCGGGCATCAAATTTGATTATGCAATCGTCCTTGATGGTGATTATGATGGTAGTGGTCAATGTTTCCATGAGAACTTGGGTGGCCGTGGTCTCGCGGTGGCGTGGTGGTTTCTATGGGGGTGGCGTTTCTATAGAGACGGCGGCGGTTTCCAAGAGGGTGACGACAACAGAATTGTTGGGGAGACTAGGGTTTCTCCTAAAGTGGCTTGCCGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.55

Weight (kDa)

8.73

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	17
AccII	CGCG	1 cut(s)	229
AciI	CCGC	5 cut(s)	35, 42, 229, 275, 278
AclWI	GGATC	3 cut(s)	77, 98, 111
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgeI	ACCGGT	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	229, 263, 310
AlwI	GGATC	3 cut(s)	77, 98, 111
AoxI	GGCC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	145
AsiGI	ACCGGT	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	3 cut(s)	106, 184, 304
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BamHI	GGATCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	351
BccI	CCATC	4 cut(s)	82, 91, 163, 175
BceAI	ACGGC	2 cut(s)	203, 288
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	229, 263, 310
BfaI	CTAG	2 cut(s)	320, 352
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	3 cut(s)	36, 43, 276
BlsI	GCNGC	3 cut(s)	37, 44, 277
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	19, 105
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	17
BshTI	ACCGGT	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	21, 345
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	229, 263, 310
BsmBI	CGTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	82, 103
BspACI	CCGC	5 cut(s)	35, 42, 229, 275, 278
BspANI	GGCC	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	19, 105
BspPI	GGATC	3 cut(s)	77, 98, 111
BspT107I	GGYRCC	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	82, 103
BstC8I	GCNNGC	3 cut(s)	33, 40, 342
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	85, 106
BstMAI	GTCTC	3 cut(s)	229, 263, 310
BstMBI	GATC	2 cut(s)	82, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	33, 40, 342
Cfr10I	RCCGGY	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	18
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	2 cut(s)	32, 202
CviJI	RGCY	4 cut(s)	38, 218, 340, 349
CviKI_1	RGCY	4 cut(s)	38, 218, 340, 349
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	2 cut(s)	84, 105
DpnII	GATC	2 cut(s)	82, 103
EaeI	YGGCCR	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	2 cut(s)	35, 205
FaiI	YATR	6 cut(s)	33, 155, 179, 203, 249, 266
FatI	CATG	2 cut(s)	31, 201
Fnu4HI	GCNGC	3 cut(s)	36, 43, 276
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	36, 43, 276
FspBI	CTAG	2 cut(s)	320, 352
GluI	GCNGC	3 cut(s)	36, 43, 276
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	21, 345
Hin1II	CATG	2 cut(s)	35, 205
HpaII	CCGG	2 cut(s)	21, 345
HphI	GGTGA	3 cut(s)	106, 184, 304
Hpy188I	TCNGA	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	4
HpyCH4V	TGCA	2 cut(s)	78, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	35, 205
KpnI	GGTACC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	82, 103
LpnPI	CCDG	1 cut(s)	34
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	320, 352
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	84, 105
MboI	GATC	2 cut(s)	82, 103
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	125, 145, 305
MnlI	CCTC	1 cut(s)	282
MspI	CCGG	2 cut(s)	21, 345
MspR9I	CCNGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	82, 103
NlaIII	CATG	2 cut(s)	35, 205
NlaIV	GGNNCC	2 cut(s)	19, 105
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	35
PaeI	GCATGC	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	37, 44, 277
PspN4I	GGNNCC	2 cut(s)	19, 105
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SatI	GCNGC	3 cut(s)	36, 43, 276
Sau3AI	GATC	2 cut(s)	82, 103
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	264
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	3 cut(s)	125, 145, 305
SsiI	CCGC	5 cut(s)	35, 42, 229, 275, 278
SspMI	CTAG	2 cut(s)	320, 352
StyD4I	CCNGG	1 cut(s)	344
TasI	AATT	3 cut(s)	125, 145, 305
TauI	GCSGC	3 cut(s)	38, 45, 278
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	96
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	2 cut(s)	320, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.